Files

132 lines
5.7 KiB
JSON
Raw Permalink Normal View History

2026-08-03 18:42:47 +08:00
{
"schema_version": "string_ppi_task0_baseline_v1",
"captured_at": "2026-07-21T04:00:00+08:00",
"mode": "baseline_and_red_only",
"production_code_modified": false,
"deployment": {
"ssh_host": "planai5090",
"hostname": "xzq-Rack-Server",
"project_root": "/home/xzq/5090/PlantAI-dev4090-7/PlantAI-dev",
"web_port": 9010,
"service_manager": "shell_parent_process_not_systemd",
"launcher_pid": 2391849,
"web_pid": 2391890,
"worker_main_pids": [2391860, 2391866, 2391873, 2391880, 2391891],
"queue_prefix": "plantai_4090_9010",
"redis_url": "redis://localhost:6379/11",
"web_cwd": "/home/xzq/5090/PlantAI-dev4090-7/PlantAI-dev",
"worker_cwd": "/home/xzq/5090/PlantAI-dev4090-7/PlantAI-dev",
"module_files": {
"apps.web.vue3.main": "/home/xzq/5090/PlantAI-dev4090-7/PlantAI-dev/apps/web/vue3/main.py",
"apps.web.pipeline_backend": "/home/xzq/5090/PlantAI-dev4090-7/PlantAI-dev/apps/web/pipeline_backend.py",
"gfa_core.ppi_string_policy": "/home/xzq/5090/PlantAI-dev4090-7/PlantAI-dev/gfa_core/ppi_string_policy.py",
"skills.ppi.run": "/home/xzq/5090/PlantAI-dev4090-7/PlantAI-dev/skills/ppi/run.py",
"celery_app": "/home/xzq/5090/PlantAI-dev4090-7/PlantAI-dev/celery_app.py"
},
"celery_broker_url": "redis://localhost:6379/11",
"celery_result_backend": "redis://localhost:6379/11",
"observed_9010_workers": [
"plantai_4090_9010_default@xzq-Rack-Server",
"plantai_4090_9010_heavy@xzq-Rack-Server",
"plantai_4090_9010_medium@xzq-Rack-Server",
"plantai_4090_9010_light@xzq-Rack-Server",
"plantai_4090_9010_rnaseq@xzq-Rack-Server"
]
},
"real_request": {
"timestamp": "2026-07-21T03:21:36.987480+08:00",
"conversation_id": "conv_20260720_210554_default",
"conversation_file": "memory_storage/conversations/202607/conv_20260720_210554_default.json",
"user_message": "执行ppi分析",
"job_id": "job_1784552755238_b8762f",
"family": "HKL",
"target_species_code": "Sv",
"target_scientific_name_in_config": "Setaria_viridis",
"target_scope": "workspace/job_1784552755238_b8762f/final/Sv.HKL.HKL.target-Sv.target_only.scope.json",
"target_scope_id": "HKL.target-Sv.target_only",
"observed_messages": [
{
"timestamp": "2026-07-21T03:21:40.525445+08:00",
"content": "PPI/KaKs 前置数据检查通过:缺少可用同源映射,已自动插入 Ortholog"
},
{
"timestamp": "2026-07-21T03:21:50.359623+08:00",
"content": "提交阶段: Ortholog"
},
{
"timestamp": "2026-07-21T03:21:56.230245+08:00",
"content": "目标物种 Sv;当前参考物种未选择;无可用近源推荐"
},
{
"timestamp": "2026-07-21T03:21:58.536206+08:00",
"content": "批量执行暂停;reason=ppi_reference_data_missing"
}
]
},
"live_preflight_replay": {
"endpoint": "http://127.0.0.1:9010/api/ppi/species-resolution",
"request": {
"job_id": "job_1784552755238_b8762f",
"prefix": "Sv.HKL",
"ppiSpecies": "auto",
"targetSpecies": ["Sv"],
"referenceSpecies": [],
"geneFamily": "HKL",
"requestedStages": ["ppi"]
},
"response_summary": {
"status": "needs_reference_data",
"issue_code": "ppi_reference_data_missing",
"target_string_supported": false,
"selected_string_species": "",
"selected_taxon_id": "",
"reference_species": "",
"required_next_stage": "ortholog",
"decision": "needs_reference_species",
"reference_recommendations": []
}
},
"snapshot": {
"production_path": "data/string/v12.0",
"present": false
},
"source_sha256": {
"apps/web/vue3/main.py": "4bc6ec0340ae1266c714b08c5329654bb666b88248c3ccc284a0b6674fb826c9",
"apps/web/pipeline_backend.py": "3f425f45b8532ee02b4394c13fa0d20d31525ab70b8287956bbdbb4494a16362",
"apps/web/vue3/index.html": "48031ee6a1235d636b9e3effe443eef539bd0023061f526a3952c099c8634fd7",
"gfa_core/ppi_string_policy.py": "92008ebbc1ed3f64d2dc2a8e289dc244e2896b73fc02b29f47eed022f3c73039",
"gfa_core/string_species_registry.py": "9f6f8de18f745cdbd6932190aefcf0fcdc2683e3373bbc468210e5b2a86d5c3e",
"skills/ppi/run.py": "72db9891c556ee1ff7593de7e52a96a68d1ef4cb0e0c6cfe97561343be8a526d",
"celery_app.py": "7ce4de7719f68edc79edac7a7115716db31956912e0589c7bd9a7a90e582fd77",
"start_celery_9000.sh": "c68b864023f9bdd4eb9053797a8c156ad35a4e385b584070456d5160b4d9cec3"
},
"red_tests": [
{
"nodeid": "tests/unit/test_string_ppi_production_wiring_red.py::test_setaria_scientific_name_reaches_snapshot_resolver",
"result": "failed_as_expected",
"failure": "KeyError: species_resolution",
"root_cause_boundary": "backend preflight does not call or expose the snapshot resolver"
},
{
"nodeid": "tests/unit/test_string_ppi_production_wiring_red.py::test_registry_only_numeric_taxon_reaches_string_execution",
"result": "failed_as_expected",
"failure": "ValueError: Unsupported or empty STRING species: 3708",
"root_cause_boundary": "StringAPI execution still resolves only through the legacy code map"
},
{
"nodeid": "tests/unit/test_string_ppi_production_wiring_red.py::test_preflight_without_confirmed_reference_never_requests_ortholog",
"result": "failed_as_expected",
"failure": "AssertionError: expected required_next_stage empty, got ortholog",
"root_cause_boundary": "preflight requests Ortholog before a reference identity is confirmed"
}
],
"gate_0": {
"stable_reproduction": true,
"three_distinct_failures": true,
"production_runtime_identity_verified": true,
"real_job_evidence_verified": true,
"status": "pass_for_task_0_only",
"implementation_authorized_by_this_artifact": false
}
}