634 lines
22 KiB
Python
634 lines
22 KiB
Python
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'''
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PyMOL Plugins Engine, Graphical Plugin Manager
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(c) 2011-2012 Thomas Holder, PyMOL OS Fellow
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License: BSD-2-Clause
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'''
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import sys
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import Pmw
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import tkinter as Tkinter
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import tkinter.simpledialog as tkSimpleDialog
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from .legacysupport import tkMessageBox, tkFileDialog
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from . import pref_get
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default_pad = {'padx': 5, 'pady': 5}
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default_top = {'fill': 'x', 'anchor': 'n', 'side': 'top'}
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default_top.update(default_pad)
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def confirm_network_access():
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'''
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Popup dialog with network access notification (only once per session)
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'''
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self = confirm_network_access
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if self.ok < 0:
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tkMessageBox.showinfo('Info',
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'Network download has been disabled, sorry!')
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return False
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if self.ok > 0:
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return True
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self.ok = tkMessageBox.askyesno('Confirm', 'PyMOL will now download'
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' executable code from the internet! Proceed?')
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return self.ok
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# valid values: 1=never ask, 0=ask once per session, -1=network access disabled
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confirm_network_access.ok = pref_get('network_access_ok', 0)
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def manager_dialog():
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'''
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Create the Plugin Manager dialog (with Pmw)
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'''
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from .legacysupport import get_tk_root
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dialog = PluginManager(get_tk_root())
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def plugin_info_dialog(parent, info):
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'''
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Shows a popup with plugin info (name, metadata, doc-string, ...)
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'''
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dialog = Pmw.MegaToplevel(parent,
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title = 'Info about plugin ' + info.name)
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grid = dialog.interior()
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highlighted_labels = ['Citation', 'Citation-Required']
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bg_important = '#ff6666'
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bg_notice = '#ffff99'
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def add_line(label, text):
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bg = None
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if label in highlighted_labels:
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bg = bg_important
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row = grid.grid_size()[1]
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Tkinter.Label(grid, text=label + ':', bg=bg).grid(row=row, column=0, sticky='nw', padx=5, pady=2)
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e = Tkinter.Entry(grid)
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e.insert(0, str(text))
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e.config(state='readonly')
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e.grid(row=row, column=1, sticky='nwe', padx=5, pady=2)
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if info.get_citation_required():
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Tkinter.Label(grid, text='This Plugin requires a citation. See below for details.',
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bg=bg_important, padx=10, pady=10).grid(columnspan=2, sticky='nesw')
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add_line('Name', info.name)
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if not info.is_temporary:
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add_line('Python Module Name', info.mod_name)
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add_line('Filename', info.filename)
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grid.columnconfigure(1, weight=1)
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metadata = info.get_metadata()
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for label, value in metadata.items():
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add_line(label, value)
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if not info.is_temporary:
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if not info.loaded:
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Tkinter.Label(grid, text='more information might be available after plugin is loaded',
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bg=bg_notice, padx=10, pady=10).grid(columnspan=2, sticky='nesw')
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else:
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add_line('commands', ', '.join(info.commands))
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docstring = info.get_docstring()
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if docstring is not None:
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st = Pmw.ScrolledText(grid, text_wrap='none', text_padx = 4, text_pady = 4)
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st.appendtext(docstring.strip())
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st.configure(text_state='disabled')
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st.grid(columnspan=2, sticky='nesw', padx=5, pady=2)
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grid.rowconfigure(grid.grid_size()[1] - 1, weight=1)
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elif info.loaded or info.is_temporary:
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Tkinter.Label(grid, text='no documentation available',
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bg=bg_notice, padx=10, pady=10).grid(columnspan=2, sticky='nesw')
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class PluginManager(Pmw.MegaToplevel):
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'''
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Graphical Plugin Manager Dialog
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'''
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def __init__(self, parent):
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self.super = self.__class__.__bases__[0]
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self.super.__init__(self, parent, title='Plugin Manager')
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self.minsize(600, 400)
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master = self.interior()
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# save button (only show if not in "instantsave" mode)
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from . import pref_get, pref_save
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def c_save():
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pref_save()
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b_save.configure(background=b_save_background)
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b_save = Tkinter.Button(master, text='Save Settings', command=c_save)
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b_save_background = b_save.cget('background')
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PluginManager.b_save = b_save
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if not pref_get('instantsave', True):
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b_save.pack(side='bottom', **default_pad)
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# main tabs
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notebook = Pmw.NoteBook(master)
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notebook.pack(fill='both', expand=1, padx=5, pady=5)
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self.page_installed(notebook)
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self.page_install_new(notebook)
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self.page_settings(notebook)
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self.page_about(notebook)
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def page_installed(self, notebook):
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page = notebook.add('Installed Plugins')
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# frames
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f_filter = Tkinter.Frame(page)
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f_installed = InstalledPluginsWidget(page)
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def filter_command():
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f_installed.filter(e_filter.getvalue())
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# filter items
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Tkinter.Checkbutton(f_filter, text='startup', variable=f_installed.v_fstartup, command=filter_command).pack(side='right')
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Tkinter.Checkbutton(f_filter, text='loaded', variable=f_installed.v_floaded, command=filter_command).pack(side='right')
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e_filter = Pmw.EntryField(f_filter, labelpos='w', label_text='Filter:', modifiedcommand=filter_command)
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e_filter.pack(side='left', expand=1, fill='x')
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# enable/disable all items
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f_all = Tkinter.Frame(page)
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Tkinter.Button(f_all, text='startup all', command=f_installed.startup_all).pack(side='left')
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Tkinter.Button(f_all, text='startup none', command=f_installed.startup_none).pack(side='left')
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# pack
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f_filter.pack(**default_top)
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f_all.pack(side='bottom', anchor='w', **default_pad)
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f_installed.pack(side='top', fill='both', expand=1, **default_pad)
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self.f_installed = f_installed
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def page_install_new(self, notebook):
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from pymol import Scratch_Storage, CmdException
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page = notebook.add('Install New Plugin')
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# local file
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def c_local():
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from .legacysupport import installPlugin, get_pmgapp
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installPlugin(get_pmgapp())
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self.f_installed.reload()
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w = Pmw.Group(page, tag_text='Install from local file')
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w.pack(**default_top)
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b_local = Tkinter.Button(w.interior(), text='Choose file...', command=c_local)
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b_local.pack(side='left', **default_pad)
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if confirm_network_access.ok < 0:
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Tkinter.Label(page,
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text='Network access has been disabled').pack(expand=1)
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return
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# pymolwiki
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def fetchplugin():
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if not confirm_network_access():
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return
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from .installation import installPluginFromFile
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from .repository import fetchscript
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url = e_wiki.get()
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if not len(url):
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return
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import tempfile, shutil
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tmpdir = tempfile.mkdtemp()
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try:
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filename = fetchscript(url, tmpdir, False)
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except CmdException as e:
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tkMessageBox.showerror('Error', 'Fetching Plugin failed.\n' + str(e))
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return
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if filename:
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installPluginFromFile(filename, self.interior())
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shutil.rmtree(tmpdir)
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self.f_installed.reload()
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w = Pmw.Group(page, tag_text='Install from PyMOLWiki or any URL')
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w.pack(**default_top)
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w = w.interior()
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l_repo = Tkinter.Label(w,
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text='Paste a link to a script or plugin, or a PyMOLWiki url which then will be downloaded and '
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'scanned for scripts that extend the PyMOL API', justify='left', anchor='w', wraplength=500)
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l_repo.pack(**default_top)
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e_wiki = Pmw.EntryField(w, labelpos='w', label_text='URL:', command=fetchplugin)
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e_wiki.pack(side='left', fill='x', expand=1, **default_pad)
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b_wiki = Tkinter.Button(w, text='Fetch',
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command=fetchplugin)
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b_wiki.pack(side='right', **default_pad)
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# repository
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w = Pmw.Group(page, tag_text='Install from Repository')
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w.pack(fill='both', **default_pad)
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pw = Pmw.PanedWidget(w.interior(), orient='horizontal')
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pane_left = pw.add('left', min=.2)
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pane_right = pw.add('right', min=.2, max=.5)
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repo_tmp = Scratch_Storage()
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def selecmd_left():
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'''
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Get plugins listing for selected repository.
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'''
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if not confirm_network_access():
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return
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from .repository import guess
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sels = slb_left.getcurselection()
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if len(sels) == 0:
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slb_right.setlist(['- empty -'])
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return
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try:
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url = sels[0]
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repo_tmp.r = guess(url)
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slb_right.setlist(repo_tmp.r.list())
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except:
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slb_right.setlist(['- listing failed -'])
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def infocmd_right():
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'''
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Download file, parse for metadata, show info-popup and delete file
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'''
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from . import PluginInfo
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from .installation import get_name_and_ext, extract_zipfile, zip_extensions
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sels = slb_right.getcurselection()
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if len(sels) == 0:
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return
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import tempfile, shutil, os
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tmpdir = tempfile.mkdtemp()
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tmpdirs = [tmpdir]
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try:
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name = sels[0]
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filename = repo_tmp.r.copy(name, tmpdir)
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name, ext = get_name_and_ext(filename)
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if ext in zip_extensions:
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tmpdir, dirnames = extract_zipfile(filename, ext)
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tmpdirs.append(tmpdir)
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name = dirnames[-1]
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filename = os.path.join(os.path.join(tmpdir, *dirnames), '__init__.py')
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info = PluginInfo(name, filename)
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plugin_info_dialog(self.interior(), info)
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except:
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tkMessageBox.showinfo('Error', 'Could not get plugin info')
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finally:
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for tmpdir in tmpdirs:
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shutil.rmtree(tmpdir)
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def selecmd_right():
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'''
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Download plugin from repository and install it.
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'''
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from .installation import installPluginFromFile, get_plugdir
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sels = slb_right.getcurselection()
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if len(sels) == 0:
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return
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plugdir = get_plugdir(self.interior())
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if not plugdir:
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return
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import tempfile, shutil, os
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tmpdir = tempfile.mkdtemp()
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try:
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for name in sels:
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filename = repo_tmp.r.copy(name, tmpdir)
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installPluginFromFile(filename, self.interior(), plugdir)
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except:
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err = str(sys.exc_info()[1])
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tkMessageBox.showinfo('Error', 'Could not install plugin ' + name + '\n\n' + err)
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finally:
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shutil.rmtree(tmpdir)
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self.f_installed.reload()
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slb_left = Pmw.ScrolledListBox(pane_left, items=(
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'http://pldserver1.biochem.queensu.ca/~rlc/work/pymol/',
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'https://github.com/Pymol-Scripts/Pymol-script-repo',
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# for testing
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'http://www.thomas-holder.de/projects/pymol/repository/',
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),
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listbox_height=30, labelpos='nw', label_text='Repositories',
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selectioncommand=selecmd_left)
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slb_right = Pmw.ScrolledListBox(pane_right, items=(),
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listbox_selectmode=Tkinter.EXTENDED,
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listbox_height=30, labelpos='nw', label_text='Items',)
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repo_bb_left = Pmw.ButtonBox(pane_left)
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repo_bb_right = Pmw.ButtonBox(pane_right)
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def dummy_command():
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showinfo = tkMessageBox.showinfo
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showinfo('Dummy', 'Not implemented', parent=self.interior())
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def slb_left_setlist(items):
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slb_left.setlist(items)
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self.b_save.configure(background='red')
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def slb_left_add():
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url = tkSimpleDialog.askstring('Repository URL', 'Please enter Repository URL', parent=self.interior())
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if not url:
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return
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items = list(slb_left.get())
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items.append(url)
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slb_left_setlist(items)
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slb_left.setvalue([url]) # provide list to avoid unicode problem
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def slb_left_remove():
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v = slb_left.getvalue()
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items = list(slb_left.get())
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for item in v:
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items.remove(item)
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slb_left_setlist(items)
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repo_bb_left.add('Add ...', command=slb_left_add)
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repo_bb_left.add('Remove', command=slb_left_remove)
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repo_bb_right.add('Info', command=infocmd_right)
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repo_bb_right.add('Install', command=selecmd_right)
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repo_bb_left.pack(side='bottom', fill='x',)
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repo_bb_right.pack(side='bottom', fill='x',)
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slb_left.pack(fill='both', **default_pad)
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slb_right.pack(fill='both', **default_pad)
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pw.pack(fill='both')
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|
||
|
|
def page_settings(self, notebook):
|
||
|
|
page = notebook.add('Settings')
|
||
|
|
|
||
|
|
from . import get_startup_path, set_startup_path
|
||
|
|
|
||
|
|
# plugin search path
|
||
|
|
w = Pmw.Group(page, tag_text='Plugin override search path')
|
||
|
|
w.pack(**default_top)
|
||
|
|
|
||
|
|
def slb_path_setlist(items):
|
||
|
|
set_startup_path(items)
|
||
|
|
slb_path.setlist(items)
|
||
|
|
self.b_save.configure(background='red')
|
||
|
|
|
||
|
|
def slb_path_add():
|
||
|
|
import os
|
||
|
|
from .installation import get_default_user_plugin_path as userpath
|
||
|
|
d = tkFileDialog.askdirectory(initialdir=userpath(), parent=self.interior())
|
||
|
|
if not len(d):
|
||
|
|
return
|
||
|
|
if not os.path.exists(d):
|
||
|
|
os.makedirs(d)
|
||
|
|
items = list(slb_path.get())
|
||
|
|
items.append(d)
|
||
|
|
slb_path_setlist(items)
|
||
|
|
slb_path.setvalue([d]) # provide list to avoid unicode problem
|
||
|
|
|
||
|
|
def slb_path_remove():
|
||
|
|
v = slb_path.getvalue()
|
||
|
|
items = list(slb_path.get())
|
||
|
|
for item in v:
|
||
|
|
items.remove(item)
|
||
|
|
slb_path_setlist(items)
|
||
|
|
|
||
|
|
def slb_path_move(j=1):
|
||
|
|
v = slb_path.getvalue()
|
||
|
|
if len(v) == 0:
|
||
|
|
return
|
||
|
|
items = list(slb_path.get())
|
||
|
|
i = items.index(v[0])
|
||
|
|
if not (0 <= i+j < len(items)):
|
||
|
|
return
|
||
|
|
items.pop(i)
|
||
|
|
items.insert(i+j, v[0])
|
||
|
|
slb_path_setlist(items)
|
||
|
|
slb_path.setvalue([v[0]]) # provide list to avoid unicode problem
|
||
|
|
|
||
|
|
slb_path = Pmw.ScrolledListBox(w.interior(),
|
||
|
|
items=get_startup_path(True), listbox_height=4)
|
||
|
|
if slb_path.get(0):
|
||
|
|
slb_path.setvalue([slb_path.get(0)]) # provide list to avoid unicode problem
|
||
|
|
slb_path.pack(**default_top)
|
||
|
|
|
||
|
|
bb_path = Pmw.ButtonBox(w.interior())
|
||
|
|
bb_path.add('Add new directory...', command=slb_path_add)
|
||
|
|
bb_path.add('Remove', command=slb_path_remove)
|
||
|
|
bb_path.add('Move up', command=lambda: slb_path_move(-1))
|
||
|
|
bb_path.add('Move down', command=slb_path_move)
|
||
|
|
bb_path.pack(side='top', fill='x')
|
||
|
|
|
||
|
|
l_path = Tkinter.Label(w.interior(),
|
||
|
|
text='PyMOL restart required in order to find plugins in modified plugin search path')
|
||
|
|
l_path.pack(**default_top)
|
||
|
|
|
||
|
|
w = Pmw.Group(page, tag_text='Preferences (Read-Only)')
|
||
|
|
w.pack(**default_top)
|
||
|
|
w = w.interior()
|
||
|
|
|
||
|
|
from . import preferences
|
||
|
|
for row, key in enumerate(preferences):
|
||
|
|
value = str(preferences[key])
|
||
|
|
if len(value) > 100:
|
||
|
|
value = value[:97] + '...'
|
||
|
|
Tkinter.Label(w, text=key).grid(row=row, column=0, sticky='nw', padx=3, pady=2)
|
||
|
|
e = Tkinter.Entry(w)
|
||
|
|
e.insert(0, value)
|
||
|
|
e.config(state='readonly')
|
||
|
|
e.grid(row=row, column=1, sticky='nwe', padx=5, pady=2)
|
||
|
|
w.columnconfigure(1, weight=1)
|
||
|
|
|
||
|
|
def page_about(self, notebook):
|
||
|
|
page = notebook.add('About')
|
||
|
|
|
||
|
|
st = Pmw.ScrolledText(page, text_wrap='word')
|
||
|
|
st.appendtext('Plugins are external modules which extend PyMOL\'s capabilities.\n\n'
|
||
|
|
'Plugins can provide new commands and/or add menu items to the "Plugin" menu.\n\n'
|
||
|
|
'For technical details, visit\n'
|
||
|
|
'http://pymolwiki.org/index.php/PluginArchitecture\n'
|
||
|
|
'http://pymolwiki.org/index.php/Script_Tutorial\n')
|
||
|
|
st.configure(text_state='disabled')
|
||
|
|
st.pack(fill='both', expand=1, **default_pad)
|
||
|
|
|
||
|
|
class InstalledPluginsWidget(Pmw.ScrolledFrame):
|
||
|
|
'''
|
||
|
|
Scrolled widget that shows all installed plugins.
|
||
|
|
'''
|
||
|
|
|
||
|
|
def __init__(self, parent):
|
||
|
|
self.super = self.__class__.__bases__[0]
|
||
|
|
self.super.__init__(self, parent,
|
||
|
|
vscrollmode='static',
|
||
|
|
horizflex='expand')
|
||
|
|
|
||
|
|
# filter variables
|
||
|
|
self.v_floaded = Tkinter.BooleanVar(parent, False)
|
||
|
|
self.v_fstartup = Tkinter.BooleanVar(parent, False)
|
||
|
|
|
||
|
|
self.reload()
|
||
|
|
|
||
|
|
def reload(self):
|
||
|
|
from . import plugins
|
||
|
|
|
||
|
|
for child in self.children():
|
||
|
|
child.pack_forget()
|
||
|
|
child.destroy()
|
||
|
|
|
||
|
|
for info in sorted(plugins.values(), key=lambda i: i.name.lower()):
|
||
|
|
PluginWidget(self, info)
|
||
|
|
|
||
|
|
# pack children
|
||
|
|
self.filter()
|
||
|
|
|
||
|
|
self.bind_mousewheel()
|
||
|
|
|
||
|
|
def children(self):
|
||
|
|
return self.interior().winfo_children()
|
||
|
|
|
||
|
|
def filter(self, text=''):
|
||
|
|
'''
|
||
|
|
Pack all children that match filter criteria.
|
||
|
|
'''
|
||
|
|
for child in self.children():
|
||
|
|
child.pack_forget()
|
||
|
|
|
||
|
|
for child in self.children():
|
||
|
|
if text.lower() not in child.info.name.lower():
|
||
|
|
continue
|
||
|
|
if self.v_fstartup.get() and not child.info.autoload:
|
||
|
|
continue
|
||
|
|
if self.v_floaded.get() and not child.info.loaded:
|
||
|
|
continue
|
||
|
|
child.pack()
|
||
|
|
|
||
|
|
def bind_mousewheel(self):
|
||
|
|
'''
|
||
|
|
Enable scrolling with mouse wheel.
|
||
|
|
'''
|
||
|
|
delta = 0.1
|
||
|
|
|
||
|
|
def scrollUp(event=None):
|
||
|
|
self.yview('scroll', -delta, 'pages')
|
||
|
|
|
||
|
|
def scrollDown(event=None):
|
||
|
|
self.yview('scroll', delta, 'pages')
|
||
|
|
|
||
|
|
def bind_rec(other):
|
||
|
|
if hasattr(other, 'interior'):
|
||
|
|
other = other.interior()
|
||
|
|
other.bind('<Button-4>', scrollUp)
|
||
|
|
other.bind('<Button-5>', scrollDown)
|
||
|
|
for child in other.winfo_children():
|
||
|
|
bind_rec(child)
|
||
|
|
bind_rec(self)
|
||
|
|
|
||
|
|
def startup_all(self):
|
||
|
|
for child in self.children():
|
||
|
|
child.w_startup.select()
|
||
|
|
if not child.info.autoload:
|
||
|
|
child.c_startup(False)
|
||
|
|
|
||
|
|
def startup_none(self):
|
||
|
|
for child in self.children():
|
||
|
|
child.w_startup.deselect()
|
||
|
|
if child.info.autoload:
|
||
|
|
child.c_startup(False)
|
||
|
|
|
||
|
|
class PluginWidget(Tkinter.Frame):
|
||
|
|
'''
|
||
|
|
Item of InstalledPluginsWidget that represents a installed plugin.
|
||
|
|
'''
|
||
|
|
|
||
|
|
def __init__(self, parent, info):
|
||
|
|
self.info = info
|
||
|
|
|
||
|
|
if hasattr(parent, 'interior'):
|
||
|
|
parent = parent.interior()
|
||
|
|
|
||
|
|
self.super = self.__class__.__bases__[0]
|
||
|
|
self.super.__init__(self, parent,
|
||
|
|
borderwidth=1,
|
||
|
|
padx=5, pady=5,
|
||
|
|
relief=Tkinter.SUNKEN)
|
||
|
|
|
||
|
|
topmaster = self
|
||
|
|
|
||
|
|
master = Tkinter.Frame(topmaster)
|
||
|
|
master.pack(side=Tkinter.TOP, fill='x')
|
||
|
|
|
||
|
|
w_title = Tkinter.Label(master, text=info.name)
|
||
|
|
w_title.pack(side=Tkinter.LEFT)
|
||
|
|
|
||
|
|
self.w_version = Tkinter.Label(master, text='', foreground='gray50')
|
||
|
|
self.w_version.pack(side=Tkinter.LEFT)
|
||
|
|
|
||
|
|
self.w_loadtime = Tkinter.Label(master, text='', foreground='gray50')
|
||
|
|
self.w_loadtime.pack(side=Tkinter.RIGHT)
|
||
|
|
|
||
|
|
master = Tkinter.Frame(topmaster)
|
||
|
|
master.pack(side=Tkinter.TOP, fill='x')
|
||
|
|
|
||
|
|
self.w_info = Tkinter.Button(master, text='Info', command=self.plugin_info)
|
||
|
|
self.w_info.pack(side=Tkinter.LEFT)
|
||
|
|
|
||
|
|
self.w_enable = Tkinter.Button(master, text='Load', command=self.plugin_load)
|
||
|
|
self.w_enable.pack(side=Tkinter.LEFT)
|
||
|
|
|
||
|
|
self.v_startup = Tkinter.BooleanVar(master, self.info.autoload)
|
||
|
|
self.w_startup = Tkinter.Checkbutton(master, text='Load on startup',
|
||
|
|
variable=self.v_startup, command=self.c_startup)
|
||
|
|
self.w_startup.pack(side=Tkinter.LEFT)
|
||
|
|
|
||
|
|
self.f_settings = Tkinter.Frame(master)
|
||
|
|
self.f_settings.pack(side=Tkinter.LEFT)
|
||
|
|
|
||
|
|
w_uninstall = Tkinter.Button(master, text='Uninstall', command=self.plugin_remove)
|
||
|
|
w_uninstall.pack(side=Tkinter.RIGHT)
|
||
|
|
|
||
|
|
self.status_update()
|
||
|
|
|
||
|
|
def c_startup(self, askload=True):
|
||
|
|
'''
|
||
|
|
Callback for "autoload" checkbox.
|
||
|
|
'''
|
||
|
|
self.info.autoload = self.v_startup.get()
|
||
|
|
if askload and self.info.autoload and not self.info.loaded:
|
||
|
|
if tkMessageBox.askyesno('Confirm', 'Load plugin now?', parent=self):
|
||
|
|
self.plugin_load()
|
||
|
|
PluginManager.b_save.configure(background='red')
|
||
|
|
|
||
|
|
def pack(self):
|
||
|
|
self.super.pack(self, fill='x', anchor=Tkinter.N)
|
||
|
|
|
||
|
|
def plugin_info(self):
|
||
|
|
plugin_info_dialog(self, self.info)
|
||
|
|
|
||
|
|
def plugin_load(self):
|
||
|
|
self.info.load()
|
||
|
|
self.status_update()
|
||
|
|
|
||
|
|
def plugin_remove(self):
|
||
|
|
if self.info.uninstall(self):
|
||
|
|
self.pack_forget()
|
||
|
|
self.destroy()
|
||
|
|
|
||
|
|
def status_update(self):
|
||
|
|
'''
|
||
|
|
Update contents of this item that may have changed after loading plugin.
|
||
|
|
'''
|
||
|
|
version = self.info.get_version()
|
||
|
|
if version:
|
||
|
|
text = 'version ' + self.info.get_version()
|
||
|
|
self.w_version.config(text=text)
|
||
|
|
|
||
|
|
if self.info.loaded:
|
||
|
|
text = 'Took %.3f seconds to load' % (self.info.loadtime)
|
||
|
|
self.w_loadtime.config(text=text)
|
||
|
|
self.w_enable.config(state=Tkinter.DISABLED)
|
||
|
|
|
||
|
|
# add 'Settings' button
|
||
|
|
if hasattr(self.info.module, 'settings_dialog') \
|
||
|
|
and not len(self.f_settings.winfo_children()):
|
||
|
|
Tkinter.Button(self.f_settings, text='Settings',
|
||
|
|
command=self.info.module.settings_dialog).pack()
|
||
|
|
|
||
|
|
# vi:expandtab:smarttab:sw=4:nowrap
|