拓展分析运行已发布时个别样例报前缀不对的问题

2026-08-28 19:48:46 +08:00
parent 81b0a7045d
commit 31bb5fa5e0
117 changed files with 9136190 additions and 7 deletions
@@ -1039,6 +1039,77 @@ def test_symlink_runtime_input_keeps_its_lexical_new_name(
    assert (tmp_path / "run/work/output.output.txt").read_text(encoding="utf-8") == "value\n"


+def test_input_derived_output_prefix_renames_participating_input(
+    tmp_path: Path,
+) -> None:
+    raw_code = tmp_path / "raw_code"
+    runtime_input = _write(
+        tmp_path,
+        "runtime/Ft.SPL.pep.fasta",
+        ">a\nAAA\n>b\nBBB\n>c\nCCC\n",
+    )
+    # seqkit split derives output names from the input basename; the input
+    # literal appears once and the output paths never appear verbatim.
+    script = (
+        "mkparts() {\n"
+        "    local in=\"$1\" outdir=\"$2\" base\n"
+        "    base=\"$(basename \"$in\" .fasta)\"\n"
+        "    mkdir -p \"$outdir\"\n"
+        "    head -n 2 \"$in\" > \"$outdir/${base}.part_001.fasta\"\n"
+        "    sed -n '3,4p' \"$in\" > \"$outdir/${base}.part_002.fasta\"\n"
+        "    sed -n '5,$p' \"$in\" > \"$outdir/${base}.part_003.fasta\"\n"
+        "}\n"
+        "mkparts Ft.SPL.pep.fasta split_fasta\n"
+    )
+    script_hash = _sha256_bytes(script.encode())
+    outputs = [
+        {
+            "fact_id": f"output:file:{i:03d}",
+            "original_path": f"split_fasta/Ft.SPL.pep.part_{i:03d}.fasta",
+            "transformed": True,
+        }
+        for i in (1, 2, 3)
+    ]
+    contract, resolved = _contract_and_resolved(
+        raw_code,
+        runtime_input,
+        script=script,
+        original_input="Ft.SPL.pep.fasta",
+        output_bindings=outputs,
+        patch_targets=[
+            _target(
+                binding_key="path:Ft.SPL.pep.fasta",
+                literal="Ft.SPL.pep.fasta",
+                kind="input_path",
+                script_hash=script_hash,
+                fact_ids=["input:1"],
+            )
+        ],
+    )
+
+    rendered = render_runtime_package(
+        contract, raw_code, resolved, tmp_path / "run"
+    )
+
+    assert resolved["prefix_binding"]["old_prefix"] == "Ft.SPL.pep"
+    assert {item["runtime_path"] for item in rendered["expected_outputs"]} == {
+        "split_fasta/output.part_001.fasta",
+        "split_fasta/output.part_002.fasta",
+        "split_fasta/output.part_003.fasta",
+    }
+    patched = (tmp_path / "run/work/run.sh").read_text(encoding="utf-8")
+    assert "mkparts output.fasta split_fasta" in patched
+    assert (tmp_path / "run/work/output.fasta").is_symlink()
+
+    result = replay_runtime_binding(rendered)
+    assert result["contract_passed"] is True
+    assert {item["runtime_path"] for item in result["outputs"]} == {
+        "split_fasta/output.part_001.fasta",
+        "split_fasta/output.part_002.fasta",
+        "split_fasta/output.part_003.fasta",
+    }
+
+
 def test_explicit_output_reference_covers_its_implicit_multi_outputs(
    tmp_path: Path,
 ) -> None: