WGCNA 模块-性状热图改用 BH 校正 p 值，并支持 job 置顶与优先级排序

tests/unit/test_rnaseq_wgcna_adjusted_pvalues.py

@@ -0,0 +1,16 @@
+from pathlib import Path
+
+from apps.cli.run_rnaseq_wgcna import write_r_script
+
+
+def test_wgcna_heatmap_uses_bh_adjusted_pvalues(tmp_path: Path) -> None:
+    script_path = tmp_path / "run_wgcna.R"
+    write_r_script(script_path, threads=2)
+    script = script_path.read_text(encoding="utf-8")
+
+    assert 'p.adjust(as.vector(moduleTraitPvalue), method = "BH")' in script
+    assert '".module_trait_pvalue.tsv"' in script
+    assert '".module_trait_padj.tsv"' in script
+    assert '"\\n(FDR ", signif(moduleTraitPadj, 2)' in script
+    assert "Module-trait relationships (BH-adjusted P values)" in script
+    assert "moduleTraitPadj = moduleTraitPadj" in script