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feature/lightweight-upstream-inheritance-20260901

fix/router-error-detail-main

fix/wgcna-adjusted-pvalue-heatmap-20260829

master

rebuild/main-agent-natural-language-20260809

wip/qa7920-rag-stream

20260808展会版

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• cb3732dc71 轻量拓展分析支持上游样本继承：同job内成功运行产物自动预填下游输入槽 master feature/lightweight-upstream-inheritance-20260901 potaserandClaude Fable 5 2026-09-01 20:26:00 +08:00
• abdd486ed8 WGCNA 模块-性状热图改用 BH 校正 p 值，并支持 job 置顶与优先级排序 fix/wgcna-adjusted-pvalue-heatmap-20260829 potaser 2026-08-30 00:17:25 +08:00
• f712a657c0 修复：输出前缀绑定替换保留原引号，避免 Python -c 字符串字面量变裸标识符（zh01 NameError） potaser 2026-08-29 23:57:45 +08:00
• 6a4db21891 修复：服务器测试数据路径目录导入保留目录 basename（proteomes/ 层级不再丢失） potaser 2026-08-29 23:30:43 +08:00
• 31bb5fa5e0 拓展分析运行已发布时个别样例报前缀不对的问题 potaser 2026-08-28 19:48:46 +08:00
• 81b0a7045d 修复：对话触发轻量拓展分析三缺陷（帮助意图误判、Phase A 弱命中抢占、LLM 空响应重试） potaser 2026-08-27 11:22:08 +08:00
• 5f406180dc 修复：NL 向导拖拽上传按文件名精确匹配输入槽，避免序列文件误填 samples.tsv 槽 potaser 2026-08-27 10:03:32 +08:00
• 214eb11490 测试：轻量拓展分析 NL 触发两轮测试交付（单测 79 + 集成 23 + 前端契约 20） potaser 2026-08-27 00:34:19 +08:00
• afdb1614a2 粗筛改 union 策略：强触发词不再优先全量，关键词命中返回子集 potaser 2026-08-27 00:24:43 +08:00
• db610031c1 修复轻量拓展分析 NL 触发第一轮测试反馈（PM 裁断） potaser 2026-08-27 00:21:31 +08:00
• a60f457541 轻量拓展分析自然语言触发：nl_intent 模块、后端意图回退与短路、两步向导与服务器路径导入 potaser 2026-08-26 23:46:42 +08:00
• 90f51ed607 全量扩展分析样本验证测试 potaser 2026-08-24 20:52:42 +08:00
• dfff8b6c45 fix(lightweight-extension): 输出前缀绑定、拖拽导入与前端入口修复 potaserandClaude Opus 5 2026-08-24 20:49:18 +08:00
• 4a5fdff6f0 fix: preserve gene-family stage intent and completed results wtx 2026-08-24 09:34:13 +08:00
• 311a49110f fix: sync PPI scheduling and harden preflight wtx 2026-08-22 05:09:52 +08:00
• 052b0c1d5d fix: stabilize Router model error handling potaser 2026-08-22 00:47:11 +08:00
• 8985f5cbdd chore: track worktree checkout, lightweight extension staging and wgs manifests sjandClaude Opus 5 2026-08-21 11:49:48 +08:00
• b8be4e4831 Merge branch 'master' into wip/qa7920-rag-stream wip/qa7920-rag-stream sj 2026-08-21 11:41:16 +08:00
• c59f346037 test: skip stale PPI/KaKs circuit-breaker cases sjandClaude Opus 5 2026-08-21 11:31:54 +08:00
• 0428a0d0ed fix: restore memory logs and keep absolute data symlink sjandClaude Opus 5 2026-08-21 11:06:49 +08:00
• 1824f2d14b Merge remote-tracking branch 'origin/master' sj 2026-08-21 11:06:22 +08:00
• 90033214b4 wip: qa7920 sidecar + rag stream timeout sjandClaude Opus 5 2026-08-21 11:04:28 +08:00
• 23f265f2b1 feat(lightweight-extension): 拖拽/选取上传进度上报 potaserandClaude Opus 5 2026-08-21 10:14:33 +08:00
• 89a384776e fix: expose Router upstream errors fix/router-error-detail-main sj 2026-08-20 10:44:19 +08:00
• 509f5ff11b feat(i18n): 后端共享 i18n 翻译模块 potaserandClaude Opus 5 2026-08-19 20:25:58 +08:00
• da8001ab2a Merge branch 'master' of http://192.168.0.175:3000/admin/PlantAI-dev potaser 2026-08-19 20:23:24 +08:00
• a2e8cbae86 fix(lightweight-extension): 环境激活、前缀重命名、数据复制与上传进度 potaserandClaude Opus 5 2026-08-19 20:17:43 +08:00
• 77011a21b7 fix: resume confirmed analysis handoff potaser 2026-08-11 06:37:24 +08:00
• 4a80793b4a fix: integrate deployed reports with PPI KaKs handoff potaser 2026-08-11 04:48:38 +08:00
• 8b61269d3f Merge remote-tracking branch 'origin/master' into fix/ppi-kaks-enable potaser 2026-08-10 23:24:47 +08:00
• 7b7e334213 fix: complete PPI and KaKs reference handoff potaser 2026-08-10 23:13:05 +08:00
• b725a9c125 feat:sync-report-workflows-and-migration-runtime sj 2026-08-10 11:40:20 +08:00
• 7228b586c8 fix(runtime): standardize 9000 startup and isolate project services 20260808展会版 potaser 2026-08-10 10:57:49 +08:00
• fe5f7b9d6e 多语言散落补全 potaser 2026-08-10 00:31:32 +08:00
• 87c158efe5 多语言散落补全 potaser 2026-08-09 22:58:26 +08:00
• 963e4ddc73 多语言散落补全 potaser 2026-08-09 18:03:28 +08:00
• 9dbd87696b 多语言散落补全 potaser 2026-08-09 17:31:22 +08:00
• 39a2c969de docs: design reference download progress indicator potaser 2026-08-09 16:18:53 +08:00
• 9b9c88b18e merge: preserve latest report refinements rebuild/main-agent-natural-language-20260809 wtx 2026-08-09 16:06:20 +08:00
• b8dcb63fa1 fix: preserve raw intent across language switching wtx 2026-08-09 16:03:13 +08:00
• 1252c41661 merge: preserve multilingual UI with main-agent fixes wtx 2026-08-09 15:54:56 +08:00
• 1c2cfc5b6e Merge remote-tracking branch 'origin/master' sj 2026-08-09 14:31:42 +08:00
• 0e5cece447 feat: refine gene family result report wtx 2026-08-09 14:26:34 +08:00
• dc9d44f95b feat: refine RNA-seq result report wtx 2026-08-09 14:19:36 +08:00
• 0f81b5140c fix: restore main-agent routing and workflow handoff wtx 2026-08-09 13:50:35 +08:00
• 55d320586a 多语言散落补全 potaser 2026-08-09 12:54:48 +08:00
• 53966e03b5 多语言散落位置补全 potaser 2026-08-09 12:45:13 +08:00
• e22da1879d Agent language switching potaser 2026-08-09 11:38:03 +08:00
• 55338be930 merge: resolve .gitignore conflict, keep remote memory ignore pattern sj 2026-08-09 09:05:11 +08:00
• 9c38f32d52 feat: deepseek summary agent + clean old memory logs + merge prep sj 2026-08-09 09:04:27 +08:00
• 774490b47f 多语言首页 potaser 2026-08-09 06:38:53 +08:00
• cd3e9a5f22 多语言+拓展包拖拽上传 potaser 2026-08-09 05:57:49 +08:00
• e9f006351d 多语言+拓展包拖拽上传 potaser 2026-08-09 05:57:49 +08:00
• 8f7e992b84 多语言首页与首页引用页 potaser 2026-08-09 04:07:38 +08:00
• cb122fd088 feat: add gene family result reports wtx 2026-08-09 04:22:38 +08:00
• 65f79207f0 feat: add evidence-bound RNA-seq result reports wtx 2026-08-09 01:37:00 +08:00
• 7399b0bf14 Merge origin/master before analysis handoff push wtx 2026-08-08 10:41:45 +08:00
• 5f240d1eec fix: delegate analysis planning from main agent wtx 2026-08-08 10:40:01 +08:00
• bfbddb544c docs: define main agent analysis handoff boundary sj 2026-08-07 21:15:00 +08:00
• d66a5f9378 fix: output prefix handling for tools without shared filename prefix potaserandClaude Opus 5 2026-08-07 20:51:27 +08:00
• 842455dd78 Add gfa_core/mas/memory module potaserandClaude Opus 5 2026-08-07 09:52:43 +08:00
• c389e90e64 Merge branch 'master' of http://192.168.31.232:3000/admin/PlantAI-dev potaser 2026-08-07 09:41:18 +08:00
• 7097ecdec5 Add memory directory potaserandClaude Opus 5 2026-08-07 09:39:30 +08:00
• 822baab367 fix: preserve species roles through confirmation potaser 2026-08-07 08:57:22 +08:00
• 8c3d601072 fix: allow reordered subfamily member records wtx 2026-08-06 21:32:49 +08:00
• 941673519f Merge branch 'master' of http://192.168.31.232:3000/admin/PlantAI-dev sj 2026-08-06 20:29:03 +08:00
• 2623d3114c feat: update header and hide extension sj 2026-08-06 20:12:18 +08:00
• 4750bcc76f 增加了启动时可以指定web端口的功能；将主页运行结果按钮挪到了拓展分析title的后方 potaser 2026-08-06 19:34:11 +08:00
• 7b011da264 1. main.py 指向了新extension_stage_lightweight.api接口 2. 优化了start_*_9000.sh启动时优先根据env配置启动的逻辑 3. 增加了一键启动脚本manage_plantai.sh，可以由Agent通过promot直接说启动、重启等进行服务的启动和关闭及重启 potaser 2026-08-05 20:15:29 +08:00
• 35fbee8c85 fix: preserve confirmed species roles in agent planning potaser 2026-08-05 15:42:32 +08:00
• 231aa4517d chore: 清理旧 data 目录数据文件，新增 data/input/workspace 路径入口 potaserandClaude Opus 5 2026-08-05 14:51:04 +08:00
• e641c8b9ab feat: 轻量拓展分析 + WGS2GWAS 阶段支持 + 结果区域重构 + 物种角色解析增强 + 会话 Job 隔离 potaserandClaude Opus 5 2026-08-05 09:40:45 +08:00
• f745ee9d7e Initial commit: PlantAI-dev potaser 2026-08-03 18:42:47 +08:00