# Domain Analysis Skill Configuration

skill:
  name: domain-analysis
  version: "1.0.0"
  description: "蛋白结构域分析 - HMMER+Pfam"
  author: "bbav2-team"

input:
  protein_fasta: null  # 必需: 蛋白序列FASTA文件
  pfam_hmm: null      # 必需: Pfam HMM模型文件

parameters:
  hmmscan:
    evalue: 1e-5
    coverage: 0.5
    use_cut_ga: false
  cpu: 8

output:
  format: ["tsv", "json"]
  report_template: "templates/report.md.j2"
  include_reproducibility: true

dependencies:
  conda:
    channels:
      - bioconda
      - conda-forge
    packages:
      - hmmer=3.3.2
      - biopython=1.81
      - pandas=2.0.0
      - matplotlib=3.7.0