from chempy import cpv from pymol import cmd, testing, stored class TestChempyBrick(testing.PyMOLTestCase): def test(self): try: import numpy except ImportError: self.skip('requires numpy') from chempy.brick import Brick spacing = (.5, .5, .5) origin = (3., 4., 5.) shape = (10, 10, 10) range_ = [a * (b - 1) for (a, b) in zip (spacing, shape)] data = numpy.zeros(shape, float) brick = Brick.from_numpy(data, spacing, origin) self.assertArrayEqual(brick.range, range_) cmd.load_brick(brick, 'map') extent = cmd.get_extent('map') self.assertArrayEqual(extent, [origin, cpv.add(origin, range_)])