PlantAI-dev/.superpowers/sdd/convergence-task-3-report.md

Convergence Task 3 Report

Status

DONE

The stop rule was triggered by independent review. The attempted production simplification was discarded, gfa_core/id_resolution.py was restored byte-for-byte from its archived green snapshot, and only the approved six-test active pruning remains.

Archives and checksums

• 项目记录/代码归档/2026-07-10_PPI_ID修订收敛前快照/id_resolution.full.py.txt
  • SHA-256: 2c9116a3bf72343a2b31d7cac3e630da8cd7eece98784217698695049f4f8699
• 项目记录/代码归档/2026-07-10_PPI_ID修订收敛前快照/test_id_resolution.full.py.txt
  • SHA-256: 2ce7dd983368158fd3cf43061277bf45ac1191f26cd5b3f6774bb1fc380bef89
• Restored active gfa_core/id_resolution.py
  • SHA-256: 2c9116a3bf72343a2b31d7cac3e630da8cd7eece98784217698695049f4f8699
  • cmp -s gfa_core/id_resolution.py 项目记录/代码归档/2026-07-10_PPI_ID修订收敛前快照/id_resolution.full.py.txt: exit 0.
• Active tests/unit/test_id_resolution.py
  • SHA-256: 42d18159fcd46eaef4f1bc4603729a398dbc295f0e850cd91948f42054ce860c.

Active diff scope

• gfa_core/id_resolution.py: no remaining production diff from the archived green implementation.
• tests/unit/test_id_resolution.py: retains exactly the six approved alias behaviors; removed diagnostic-only tests remain in the full archive.
• No STRING HTTP, PPI manifest, backend, frontend, CLI, Reset, or rate-gate production layer was edited.

Line counts

File	Before	After	Result
gfa_core/id_resolution.py	396	396	restored
tests/unit/test_id_resolution.py	281	181	approved pruning, -100

Exact validation

1. Active alias tests:

   /home/xia-lab/miniconda3/envs/test4py311/bin/python -m pytest tests/unit/test_id_resolution.py -q

   Result: 6 passed in 0.02s.

2. Selected PPI consumers:

   /home/xia-lab/miniconda3/envs/test4py311/bin/python -m pytest tests/unit/test_ppi_id_resolution.py -k 'geneid or resolution or origins' -q

   Result: 19 passed in 0.38s.

3. Task 2 four-file checkpoint:

   /home/xia-lab/miniconda3/envs/test4py311/bin/python -m pytest tests/unit/test_id_resolution.py tests/unit/test_ppi_id_resolution.py tests/unit/test_ppi_string_policy.py tests/unit/test_pipeline_backend_execution_env.py -q

   Result: 70 passed in 6.64s.

4. Compile check:

   /home/xia-lab/miniconda3/envs/test4py311/bin/python -m py_compile gfa_core/id_resolution.py

   Result: exit 0.

Stop-rule assessment

RESTORE. Independent review demonstrated that the smaller representation dropped sibling accession candidates from valid legacy rows and degraded namespace/method provenance persisted by PPI consumers. Because public behavior was not preserved, line-count reduction could not justify keeping the rewrite. The archived green implementation was restored exactly; no new production abstraction was added.

Fix evidence appended after review

• Read .superpowers/sdd/convergence-task-3-review.md and accepted both HIGH findings.
• Restored gfa_core/id_resolution.py from id_resolution.full.py.txt using an active patch generated from the archived bytes.
• Verified byte equality with cmp and matching SHA-256 values.
• Re-ran every binding verification command after restoration; all tests and compilation passed.
• Kept the six-test active pruning unchanged.

Concerns and self-review

• Pytest emits the repository's pre-existing RequestsDependencyWarning for installed urllib3/chardet/charset_normalizer versions; it does not affect test results.
• Public candidate values and provenance semantics are restored with the archived production file.
• Service/Celery restart was not needed; no service layer changed.