156 lines
4.1 KiB
JSON
156 lines
4.1 KiB
JSON
{
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"validation_date": "2026-07-21",
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"task": "task4_numeric_taxon_real_string_network",
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"gate": "pass",
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"target": "planai5090:/home/xzq/5090/PlantAI-dev4090-7/PlantAI-dev",
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"implementation": "skills.ppi.run.StringAPI",
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"tests": {
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"collected": 43,
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"passed": 43,
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"elapsed_seconds": 13.90
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},
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"discovery": {
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"official_aliases_url": "https://stringdb-downloads.org/download/protein.aliases.v12.0/3708.protein.aliases.v12.0.txt.gz",
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"rejected_homonym": {
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"query": "CO",
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"reason": "STRING annotation described a magnesium transporter"
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},
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"aliases_evidence": {
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"string_id": "3708.A0A078GRX0",
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"description": "MADS-box protein SOC1"
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}
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},
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"string": {
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"version": "12.0",
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"stable_address": "https://version-12-0.string-db.org",
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"taxid": "3708",
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"mapping_input": [
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"FT",
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"A0A078GRX0"
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],
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"mapped": [
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{
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"query_index": 0,
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"query_item": "FT",
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"string_id": "3708.D0QX04",
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"preferred_name": "FT",
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"taxid": 3708
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},
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{
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"query_index": 1,
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"query_item": "A0A078GRX0",
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"string_id": "3708.A0A078GRX0",
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"preferred_name": "BnaC04g50370D",
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"taxid": 3708
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}
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],
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"mapped_count": 2,
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"requests": [
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{
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"method": "GET",
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"endpoint": "https://string-db.org/api/json/version",
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"http_status": 200
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},
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{
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"method": "POST",
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"endpoint": "https://version-12-0.string-db.org/api/json/get_string_ids",
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"http_status": 200,
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"species": "3708",
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"echo_query": 1
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},
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{
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"method": "POST",
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"endpoint": "https://version-12-0.string-db.org/api/json/network",
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"http_status": 200,
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"species": "3708",
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"required_score": 200,
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"network_type": "functional",
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"add_nodes": 0
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}
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],
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"network_edge_count": 1,
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"network": [
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{
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"string_id_a": "3708.A0A078GRX0",
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"preferred_name_a": "BnaC04g50370D",
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"string_id_b": "3708.D0QX04",
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"preferred_name_b": "FT",
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"taxid": 3708,
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"score": 0.467
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}
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]
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},
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"codegraph_available": false,
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"service_restart": true,
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"deployment_gate": {
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"completed_at": "2026-07-21 06:04:42 CST",
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"port": 9010,
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"web": {
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"old_pid": 2470234,
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"new_pid": 2479563,
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"cwd": "/home/xzq/5090/PlantAI-dev4090-7/PlantAI-dev"
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},
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"workers": [
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{
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"name": "default",
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"old_pid": 2470133,
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"new_pid": 2479460,
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"queue": "plantai_4090_9010.default"
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},
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{
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"name": "heavy",
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"old_pid": 2470139,
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"new_pid": 2479470,
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"queue": "plantai_4090_9010.heavy"
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},
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{
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"name": "medium",
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"old_pid": 2470146,
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"new_pid": 2479477,
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"queue": "plantai_4090_9010.medium"
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},
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{
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"name": "light",
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"old_pid": 2470155,
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"new_pid": 2479484,
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"queue": "plantai_4090_9010.light"
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},
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{
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"name": "rnaseq",
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"old_pid": 2470163,
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"new_pid": 2479492,
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"queue": "plantai_4090_9010.rnaseq"
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}
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],
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"worker_cwd": "/home/xzq/5090/PlantAI-dev4090-7/PlantAI-dev",
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"queue_prefix": "plantai_4090_9010",
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"redis_url": "redis://localhost:6379/11",
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"redis_ping": "PONG",
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"celery_ping_nodes": 5,
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"celery_health_ok": true,
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"untouched": {
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"port_19000_pid": 2466042,
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"port_9000_listener": false
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},
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"openapi_execute_request": {
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"ppiSpecies_type": "string",
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"normalizationSpeciesLabel_type": "string"
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},
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"pydantic_probe": {
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"ppiSpecies": "3708",
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"ppiSpecies_runtime_type": "str",
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"normalizationSpeciesLabel": "Bn",
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"model_dump_preserved": true
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},
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"worker_import_probe": {
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"ppi_run_file": "/home/xzq/5090/PlantAI-dev4090-7/PlantAI-dev/skills/ppi/run.py",
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"stage_tools_file": "/home/xzq/5090/PlantAI-dev4090-7/PlantAI-dev/gfa_core/mas/tools/stage_tools.py",
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"resolved_3708": "3708",
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"rejected_999999999": true,
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"invalid_error_type": "ValueError"
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},
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"formal_ppi_job_submitted": false
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},
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"task5_entered": false
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}
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