35 lines
636 B
YAML
Executable File
35 lines
636 B
YAML
Executable File
# Motif Analysis Skill Configuration
|
|
|
|
skill:
|
|
name: motif-analysis
|
|
version: "1.0.0"
|
|
description: "保守基序分析 - MEME Suite"
|
|
author: "bbav2-team"
|
|
|
|
input:
|
|
protein_fasta: null # 必需: 蛋白序列FASTA文件
|
|
|
|
parameters:
|
|
meme:
|
|
nmotifs: 10
|
|
minw: 6
|
|
maxw: 200
|
|
model: anr # anr, zoops, oops
|
|
protein: true
|
|
cpu: 8
|
|
|
|
output:
|
|
format: ["txt", "html"]
|
|
report_template: "templates/report.md.j2"
|
|
include_reproducibility: true
|
|
|
|
dependencies:
|
|
conda:
|
|
channels:
|
|
- bioconda
|
|
- conda-forge
|
|
packages:
|
|
- meme=5.5.0
|
|
- biopython=1.81
|
|
- pandas=2.0.0
|
|
- matplotlib=3.7.0 |