39 lines
1.2 KiB
Python
Executable File
39 lines
1.2 KiB
Python
Executable File
#!/usr/bin/env python3
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"""
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RNA-Seq Enrich Skill Runner
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RNA-seq 富集分析技能执行器
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"""
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import argparse
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import json
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from datetime import datetime
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from pathlib import Path
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def main():
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parser = argparse.ArgumentParser(description="RNA-Seq Enrich Skill")
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parser.add_argument("--input-dir", required=True, help="Input directory with DE genes")
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parser.add_argument("--output-dir", required=True, help="Output directory")
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parser.add_argument("--prefix", default="", help="Output file prefix")
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parser.add_argument("--species", default="ath", help="Species code")
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parser.add_argument("--config", help="Config file (YAML)")
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parser.add_argument("--demo", action="store_true", help="Demo mode")
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args = parser.parse_args()
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print(f"RNA-Seq Enrich Skill v1.0.0")
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print(f"Input: {args.input_dir}")
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print(f"Output: {args.output_dir}")
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print(f"Prefix: {args.prefix}")
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print(f"Species: {args.species}")
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# TODO: 实现完整的 skill 逻辑
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# 目前 skill 框架已创建，实际逻辑复用 apps/cli/run_rnaseq_enrich.py
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print("✅ RNA-Seq Enrich Skill 框架已就绪")
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print("实际分析请使用: apps/cli/run_rnaseq_enrich.py")
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if __name__ == "__main__":
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main()
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