48 lines
2.0 KiB
Plaintext
Executable File
48 lines
2.0 KiB
Plaintext
Executable File
# Genetic Code Table
|
|
#
|
|
# Obtained from: http://www3.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi
|
|
#
|
|
# Version 3.1 - 1995
|
|
# Addition of Eubacterial by J.Ostell at NCBI
|
|
# Version 3.2 - 6/24/95
|
|
# Eubacterial renamed to Bacterial as most alternate starts
|
|
# have been found in Archaea
|
|
#
|
|
# Differences from the Standard Code:
|
|
#
|
|
# None
|
|
#
|
|
# Alternative Initiation Codons:
|
|
#
|
|
# GUG, UUG, AUU, CUG
|
|
#
|
|
# Systematic Range and Comments:
|
|
#
|
|
# Table 11 is used for Bacteria, Archaea, prokaryotic viruses and
|
|
# chloroplast proteins. As in the standard code, initiation is most
|
|
# efficient at AUG. In addition, GUG and UUG starts are documented in
|
|
# Archaea and Bacteria (Kozak 1983, Fotheringham et al. 1986, Golderer et
|
|
# al. 1995, Nolling et al. 1995, Sazuka & Ohara 1996, Genser et al.
|
|
# 1998, Wang et al. 2003). In E. coli, UUG is estimated to serve as
|
|
# initiator for about 3% of the bacterium's proteins (Blattner et al.
|
|
# 1997). CUG is known to function as an initiator for one plasmid-encoded
|
|
# protein (RepA) in Escherichia coli (Spiers and Bergquist, 1992). In
|
|
# addition to the NUG initiations, in rare cases Bacteria can initiate
|
|
# translation from an AUU codon as e.g. in the case of poly(A) polymerase
|
|
# PcnB and the InfC gene that codes for translation initiation factor IF3
|
|
# (Polard et al. 1991, Liveris et al. 1993, Sazuka & Ohara 1996, Binns &
|
|
# Masters 2002). The internal assignments are the same as in the standard
|
|
# code though UGA codes at low efficiency for Trp in Bacillus subtilis
|
|
# and, presumably, in Escherichia coli (Hatfiled and Diamond, 1993).
|
|
|
|
Genetic Code [11]
|
|
|
|
Bacterial and Plant Plastid
|
|
|
|
AAs = FFLLSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG
|
|
Starts = ---M---------------M------------MMMM---------------M------------
|
|
Base1 = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
|
|
Base2 = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
|
|
Base3 =
|
|
TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
|