44 lines
1.6 KiB
Plaintext
Executable File
44 lines
1.6 KiB
Plaintext
Executable File
# Genetic Code Table
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#
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# Obtained from: http://www3.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi
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#
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# Version 3.1 - 1995
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# Initial base data set from Andrzej Elzanowski (PIR/NCBI)
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#
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# Differences from the Standard Code:
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#
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# Code 13 Standard
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#
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# AGA Gly G Arg R
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# AGG Gly G Arg R
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# AUA Met M Ile I
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# UGA Trp W Ter *
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#
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#
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# Systematic Range and Comments:
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#
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# There is evidence from a phylogenetically diverse sample of tunicates
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# (Urochordata) that AGA and AGG code for glycine. In other organisms,
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# AGA/AGG code for either arginine or serine and in vertebrate
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# mitochondria they code a STOP. Evidence for glycine translation of
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# AGA/AGG has been found in Pyura stolonifera (Durrheim et al. 1993),
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# Halocynthia roretzi (Kondow et al. 1999, Yokobori et al., 1993,
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# Yokobori et al. 1999) and Ciona savignyi (Yokobori et al. 2003). In
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# addition, the Halocynthia roretzi mitochondrial genome encodes an
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# additional tRNA gene with the anticodon U*CU that is thought to enable
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# the use of AGA or AGG codons for glycine and the gene has been shown to
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# be transcribed in vivo (Kondow et al. 1999, Yokobori et al. 1999).
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Genetic Code [13]
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Ascidian Mitochondrial
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AAs = FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNKKSSGGVVVVAAAADDEEGGGG
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Starts = -----------------------------------M----------------------------
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Base1 = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
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Base2 = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
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Base3 = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
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