42 lines
1.6 KiB
Plaintext
Executable File
42 lines
1.6 KiB
Plaintext
Executable File
# Genetic Code Table
|
|
#
|
|
# Obtained from: http://www3.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi
|
|
#
|
|
# Version 3.5
|
|
# Added code 21, Trematode Mitochondrial
|
|
# (as deduced from: Garey & Wolstenholme,1989; Ohama et al, 1990)
|
|
#
|
|
# Systematic Range:
|
|
#
|
|
# Trematoda: Ohama, T, S. Osawa, K. Watanabe, T.H. Jukes, 1990. J.
|
|
# Molec Evol. 30 Garey, J.R. and D.R. Wolstenholme, 1989. J. Molec.
|
|
# Evol. 28: 374-387 329-332.
|
|
#
|
|
# Other Alternative Initiation Codons
|
|
#
|
|
# GUG, UUG (and possibly CUG) in the Archaea (Noelling et al., unpublished)
|
|
#
|
|
# AUA, GUG, UUG, and AUC or AAG may be used (at least in experimental
|
|
# systems) by the yeasts Saccharomyces cerevisiae (Olsen, 1987, and references
|
|
# therein).
|
|
#
|
|
# ACG initiates translation of certain proteins in the adeno-associated virus
|
|
# type 2 (Becerra et al., 1985), the phage T7 mutant CR17 (Anderson and
|
|
# Buzash-Pollert, 1985), Sendai virus (Gupta and Patwardhan, 1988), and rice
|
|
# chloroplast (Hiratsuka et al., 1989). Also, it is the most effective non-AUG
|
|
# initiation codon in mammalin cells (Koepke and Leggatt, 1991).
|
|
#
|
|
# CUG is the initiation codon for one of the two alternative products of the
|
|
# human c-myc gene (Hann et al., 1987).
|
|
#
|
|
|
|
Genetic Code [21]
|
|
|
|
Trematode Mitochondrial
|
|
|
|
AAs = FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNNKSSSSVVVVAAAADDEEGGGG
|
|
Starts = -----------------------------------M---------------M------------
|
|
Base1 = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
|
|
Base2 = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
|
|
Base3 = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
|