57 lines
1.9 KiB
Plaintext
Executable File
57 lines
1.9 KiB
Plaintext
Executable File
# Genetic Code Table
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#
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# Obtained from: http://www3.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi
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#
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# Version 3.1 - 1995
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# Initial base data set from Andrzej Elzanowski (PIR/NCBI)
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#
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# Differences from the Standard Code:
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#
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# Code 4 Standard
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#
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# UGA Trp W Ter *
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#
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#
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# Alternative Initiation Codons:
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#
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# Trypanosoma: UUA, UUG, CUG
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# Leishmania: AUU, AUA
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# Tertrahymena: AUU, AUA, AUG
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# Paramecium: AUU, AUA, AUG, AUC, GUG, GUA(?)
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# (Pritchard et al., 1990)
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#
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# Systematic Range:
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#
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# Mycoplasmatales: Mycoplasma, Spiroplasma (Bove et al., 1989);
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#
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# Fungi: Emericella nidulans, Neurospora crassa, Podospora anserina,
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# Acremonium (Fox, 1987), Candida parapsilosis (Guelin et al., 1991),
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# Trichophyton rubrum (de Bievre and Dujon, 1992), Dekkera/Brettanomyces,
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# Eeniella (Hoeben et al., 1993), and probably Ascobolus immersus,
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# Aspergillus amstelodami, Claviceps purpurea, and Cochliobolus
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# heterostrophus.
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#
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# Protozoa: Trypanosoma brucei, Leishmania tarentolae, Paramecium
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# tetraurelia, Tetrahymena pyriformis and probably Plasmodium gallinaceum
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# (Aldritt et al., 1989)].
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#
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# Metazoa: Coelenterata (Ctenophora and Cnidaria)
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#
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# Comments:
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#
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# This code is also used for the kinetoplast DNA (maxicircles,
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# minicircles). Kinetoplasts are modified mitochondria (or their parts).
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#
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# This code is not used in the Acholeplasmataceae and plant-pathogenic
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# mycoplasma-like organisms (MLO) (Lim and Sears, 1992)
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Genetic Code [4]
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Mold, Protozoan, Coelenterate Mitochondrial and Mycoplasma/Spiroplasma
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AAs = FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG
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Starts = --MM---------------M------------MMMM---------------M------------
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Base1 = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
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Base2 = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
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Base3 = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
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