3087 lines
205 KiB
XML
3087 lines
205 KiB
XML
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
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<nucleotide-sequence-matches xmlns="https://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/schemas" interproscan-version="5.31-70.0">
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<nucleotide-sequence>
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<sequence md5="b2a7416cb92565c004becb7510f46840">ctggtgctgctggcggcgtttgattgcattgatgataccaaactggtgaaacagattattattagcgaaattattaacagcctgccgaacattgtgaacgataaatatggccgcaaagtgctgctgtatctgctgagcccgcgcgatccggcgcataccgtgcgcgaaattattgaagtgctgcagaaaggcgatggcaacgcgcatagcaaaaaagataccgaaattcgccgccgcgaaatgaaatataaacgcattgtgtttaaagtgggcaccagcagcctgaccaacgaagatggcagcctgagccgcagcaaagtgaaagatattacccagcagctggcgatgctgcatgaagcgggccatgaactgattctggtgagcagcggcgcgattgcggcgggctttggcgcgctgggctttaaaaaacgcccgaccaaaattgcggataaacaggcgagcgcggcggtgggccagggcctgctgctggaagaatataccaccaacctgctgctgcgccagattgtgagcgcgcagattctgctgacccaggatgattttgtggataaacgccgctataaaaacgcgcatcaggcgctgagcgtgctgctgaaccgcggcgcgattccgattattaacgaaaacgatagcgtggtgattgatgaactgaaagtgggcgataacgataccctgagcgcgcaggtggcggcgatggtgcaggcggatctgctggtgtttctgaccgatgtggatggcctgtataccggcaacccgaacagcgatccgcgcgcgaaacgcctggaacgcattgaaaccattaaccgcgaaattattgatatggcgggcggcgcgggcagcagcaacggcaccggcggcatgctgaccaaaattaaagcggcgaccattgcgaccgaaagcggcgtgccggtgtatatttgcagcagcctgaaaagcgatagcatgattgaagcggcggaagaaaccgaagatggcagctattttgtggcgcaggaaaaaggcctgcgcacccagaaacagtggctggcgttttatgcgcagagccagggcagcatttgggtggataaaggcgcggcggaagcgctgagccagtatggcaaaagcctgctgctgagcggcattgtggaagcggaaggcgtgtttagctatggcgatattgtgaccgtgtttgataaagaaagcggcaaaagcctgggcaaaggccgcgtgcagtttggcgcgagcgcgctggaagatatgctgcgcagccagaaagcgaaaggcgtgctgatttatcgcgatgattggattagcattaccccggaaattcagctgctgtttaccgaattt</sequence>
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<xref id="ENA|AACH01000027|AACH01000027.2" name="ENA|AACH01000027|AACH01000027.2 Saccharomyces mikatae IFO 1815 YM4906-Contig2858, whole genome shotgun sequence."/>
|
|
<orf end="1306" start="1163" strand="ANTISENSE">
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|
<protein>
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<sequence md5="4ad9f9a33e6f315d884c4972ff7dba44">SNHRDKSARLSLSGCAAYLPARSRQTARGLCPGFCRFLYQTRSQYRHS</sequence>
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<xref id="ENA|AACH01000027|AACH01000027.2_14" name="ENA|AACH01000027|AACH01000027.2_14 [1306 - 1163] (REVERSE SENSE) Saccharomyces mikatae IFO 1815 YM4906-Contig2858, whole genome shotgun sequence."/>
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<xref id="Bob_13" name="Bob_13 [1066 - 923] (REVERSE SENSE)"/>
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<matches/>
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</protein>
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</orf>
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<orf end="1347" start="1" strand="ANTISENSE">
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<protein>
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<sequence md5="cba1a2865234ac5a5d93de7fd539db08">KFGKQQLNFRGNANPIIAINQHAFRFLAAQHIFQRARAKLHAAFAQAFAAFFIKHGHNIAIAKHAFRFHNAAQQQAFAILAQRFRRAFIHPNAALALRIKRQPLFLGAQAFFLRHKIAAIFGFFRRFNHAIAFQAAANIHRHAAFGRNGRRFNFGQHAAGAVAAARAARHINNFAVNGFNAFQAFRARIAVRVAGIQAIHIGQKHQQIRLHHRRHLRAQGIVIAHFQFINHHAIVFVNNRNRAAVQQHAQRLMRVFIAAFIHKIILGQQNLRAHNLAQQQVGGIFFQQQALAHRRARLFIRNFGRAFFKAQRAKARRNRAAAHQNQFMARFMQHRQLLGNIFHFAAAQAAIFVGQAAGAHFKHNAFIFHFAAANFGIFFAMRVAIAFLQHFNNFAHGMRRIARAQQIQQHFAAIFIVHNVRQAVNNFANNNLFHQFGIINAIKRRQQHQ</sequence>
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<xref id="ENA|AACH01000027|AACH01000027.2_24" name="ENA|AACH01000027|AACH01000027.2_24 [1347 - 1] (REVERSE SENSE) Saccharomyces mikatae IFO 1815 YM4906-Contig2858, whole genome shotgun sequence."/>
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<matches>
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<phobius-match>
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|
<signature ac="CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm." name="Cytoplasmic domain">
|
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<signature-library-release library="PHOBIUS" version="1.01"/>
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</signature>
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<model-ac>CYTOPLASMIC_DOMAIN</model-ac>
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<locations>
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<phobius-location start="392" end="449">
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<location-fragments>
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<phobius-location-fragment start="392" end="449" dc-status="CONTINUOUS"/>
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</location-fragments>
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</phobius-location>
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</locations>
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</phobius-match>
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<phobius-match>
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<signature ac="CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm." name="Cytoplasmic domain">
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|
<signature-library-release library="PHOBIUS" version="1.01"/>
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</signature>
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<model-ac>CYTOPLASMIC_DOMAIN</model-ac>
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<locations>
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<phobius-location start="1" end="336">
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|
<location-fragments>
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<phobius-location-fragment start="1" end="336" dc-status="CONTINUOUS"/>
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</location-fragments>
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</phobius-location>
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</locations>
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</phobius-match>
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|
<phobius-match>
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<signature ac="NON_CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region." name="Non cytoplasmic domain">
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|
<signature-library-release library="PHOBIUS" version="1.01"/>
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</signature>
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<model-ac>NON_CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="362" end="366">
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|
<location-fragments>
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|
<phobius-location-fragment start="362" end="366" dc-status="CONTINUOUS"/>
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</location-fragments>
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</phobius-location>
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|
</locations>
|
|
</phobius-match>
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|
<phobius-match>
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<signature ac="TRANSMEMBRANE" desc="Region of a membrane-bound protein predicted to be embedded in the membrane." name="Transmembrane region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
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</signature>
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<model-ac>TRANSMEMBRANE</model-ac>
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|
<locations>
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|
<phobius-location start="367" end="391">
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|
<location-fragments>
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|
<phobius-location-fragment start="367" end="391" dc-status="CONTINUOUS"/>
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</location-fragments>
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</phobius-location>
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</locations>
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</phobius-match>
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<phobius-match>
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|
<signature ac="TRANSMEMBRANE" desc="Region of a membrane-bound protein predicted to be embedded in the membrane." name="Transmembrane region">
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<signature-library-release library="PHOBIUS" version="1.01"/>
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</signature>
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<model-ac>TRANSMEMBRANE</model-ac>
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|
<locations>
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<phobius-location start="337" end="361">
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|
<location-fragments>
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<phobius-location-fragment start="337" end="361" dc-status="CONTINUOUS"/>
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</location-fragments>
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</phobius-location>
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</locations>
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</phobius-match>
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|
<tmhmm-match>
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<signature ac="TMhelix" desc="Region of a membrane-bound protein predicted to be embedded in the membrane.">
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<signature-library-release library="TMHMM" version="2.0c"/>
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</signature>
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<model-ac>TMhelix</model-ac>
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|
<locations>
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<tmhmm-location start="369" end="391">
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|
<location-fragments>
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<tmhmm-location-fragment start="369" end="391" dc-status="CONTINUOUS"/>
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</location-fragments>
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</tmhmm-location>
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</locations>
|
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</tmhmm-match>
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|
<tmhmm-match>
|
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<signature ac="TMhelix" desc="Region of a membrane-bound protein predicted to be embedded in the membrane.">
|
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<signature-library-release library="TMHMM" version="2.0c"/>
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</signature>
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<model-ac>TMhelix</model-ac>
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<locations>
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|
<tmhmm-location start="337" end="359">
|
|
<location-fragments>
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|
<tmhmm-location-fragment start="337" end="359" dc-status="CONTINUOUS"/>
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</location-fragments>
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</tmhmm-location>
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</locations>
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</tmhmm-match>
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</matches>
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</protein>
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</orf>
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<orf end="817" start="638" strand="ANTISENSE">
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<protein>
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<sequence md5="11cd3179c2a0a321041f86fb81892cad">WFQCVPGVSRADRCSGCRYTGHPHRSETPADPPAPSPPPARSGYRYRPLSVHQSPRYRFR</sequence>
|
|
<xref id="Bob_16" name="Bob_16 [577 - 398] (REVERSE SENSE)"/>
|
|
<xref id="ENA|AACH01000027|AACH01000027.2_17" name="ENA|AACH01000027|AACH01000027.2_17 [817 - 638] (REVERSE SENSE) Saccharomyces mikatae IFO 1815 YM4906-Contig2858, whole genome shotgun sequence."/>
|
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<matches>
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|
<mobidblite-match>
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|
<signature ac="mobidb-lite" desc="consensus disorder prediction" name="disorder_prediction">
|
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<signature-library-release library="MOBIDB_LITE" version="1.5"/>
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</signature>
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<model-ac>mobidb-lite</model-ac>
|
|
<locations>
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<mobidblite-location sequence-feature="" start="16" end="60">
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|
<location-fragments>
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|
<mobidblite-location-fragment start="16" end="60" dc-status="CONTINUOUS"/>
|
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</location-fragments>
|
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</mobidblite-location>
|
|
</locations>
|
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</mobidblite-match>
|
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<mobidblite-match>
|
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<signature ac="mobidb-lite" desc="consensus disorder prediction" name="disorder_prediction">
|
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<signature-library-release library="MOBIDB_LITE" version="1.5"/>
|
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</signature>
|
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<model-ac>mobidb-lite</model-ac>
|
|
<locations>
|
|
<mobidblite-location sequence-feature="Proline-rich" start="28" end="42">
|
|
<location-fragments>
|
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<mobidblite-location-fragment start="28" end="42" dc-status="CONTINUOUS"/>
|
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</location-fragments>
|
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</mobidblite-location>
|
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</locations>
|
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</mobidblite-match>
|
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</matches>
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</protein>
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</orf>
|
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<orf end="526" start="383" strand="SENSE">
|
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<protein>
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<sequence md5="f721ded069c8a767dac17d73641c938d">AAARLRRALARWALKNARPKLRINRRARRWARACCWKNIPPTCCCARL</sequence>
|
|
<xref id="ENA|AACH01000027|AACH01000027.2_3" name="ENA|AACH01000027|AACH01000027.2_3 [383 - 526] Saccharomyces mikatae IFO 1815 YM4906-Contig2858, whole genome shotgun sequence."/>
|
|
<xref id="Bob_2" name="Bob_2 [143 - 286]"/>
|
|
<matches/>
|
|
</protein>
|
|
</orf>
|
|
<orf end="880" start="743" strand="SENSE">
|
|
<protein>
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<sequence md5="d976f88c85e612d94ad1bc52d1c99f36">PMWMACIPATRTAIRARNAWNALKPLTAKLLIWRAARAAATAPAAC</sequence>
|
|
<xref id="Bob_5" name="Bob_5 [503 - 640]"/>
|
|
<xref id="ENA|AACH01000027|AACH01000027.2_6" name="ENA|AACH01000027|AACH01000027.2_6 [743 - 880] Saccharomyces mikatae IFO 1815 YM4906-Contig2858, whole genome shotgun sequence."/>
|
|
<matches/>
|
|
</protein>
|
|
</orf>
|
|
<orf end="809" start="684" strand="SENSE">
|
|
<protein>
|
|
<sequence md5="bfcb80dc6b493236a44d89fdfbae48dd">RYPERAGGGDGAGGSAGVSDRCGWPVYRQPEQRSARETPGTH</sequence>
|
|
<xref id="ENA|AACH01000027|AACH01000027.2_5" name="ENA|AACH01000027|AACH01000027.2_5 [684 - 809] Saccharomyces mikatae IFO 1815 YM4906-Contig2858, whole genome shotgun sequence."/>
|
|
<xref id="Bob_4" name="Bob_4 [444 - 569]"/>
|
|
<matches>
|
|
<mobidblite-match>
|
|
<signature ac="mobidb-lite" desc="consensus disorder prediction" name="disorder_prediction">
|
|
<signature-library-release library="MOBIDB_LITE" version="1.5"/>
|
|
</signature>
|
|
<model-ac>mobidb-lite</model-ac>
|
|
<locations>
|
|
<mobidblite-location sequence-feature="" start="1" end="42">
|
|
<location-fragments>
|
|
<mobidblite-location-fragment start="1" end="42" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</mobidblite-location>
|
|
</locations>
|
|
</mobidblite-match>
|
|
</matches>
|
|
</protein>
|
|
</orf>
|
|
<orf end="995" start="594" strand="ANTISENSE">
|
|
<protein>
|
|
<sequence md5="89345cdafdd357ad8b2bef1ecdfd7be2">LPSSVSSAASIMLSLFRLLQIYTGTPLSVAMVAALILVSMPPVPLLLPAPPAISIISRLMVSMRSRRFARGSLFGLPVYRPSTSVRNTSRSACTIAATCALRVSLSPTFSSSITTLSFSLIIGIAPRFSSTLSA</sequence>
|
|
<xref id="ENA|AACH01000027|AACH01000027.2_18" name="ENA|AACH01000027|AACH01000027.2_18 [995 - 594] (REVERSE SENSE) Saccharomyces mikatae IFO 1815 YM4906-Contig2858, whole genome shotgun sequence."/>
|
|
<xref id="Bob_17" name="Bob_17 [755 - 354] (REVERSE SENSE)"/>
|
|
<matches>
|
|
<phobius-match>
|
|
<signature ac="TRANSMEMBRANE" desc="Region of a membrane-bound protein predicted to be embedded in the membrane." name="Transmembrane region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>TRANSMEMBRANE</model-ac>
|
|
<locations>
|
|
<phobius-location start="45" end="61">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="45" end="61" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm." name="Cytoplasmic domain">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="1" end="20">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="1" end="20" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="NON_CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region." name="Non cytoplasmic domain">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>NON_CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="40" end="44">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="40" end="44" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm." name="Cytoplasmic domain">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="62" end="134">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="62" end="134" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="TRANSMEMBRANE" desc="Region of a membrane-bound protein predicted to be embedded in the membrane." name="Transmembrane region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>TRANSMEMBRANE</model-ac>
|
|
<locations>
|
|
<phobius-location start="21" end="39">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="21" end="39" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<tmhmm-match>
|
|
<signature ac="TMhelix" desc="Region of a membrane-bound protein predicted to be embedded in the membrane.">
|
|
<signature-library-release library="TMHMM" version="2.0c"/>
|
|
</signature>
|
|
<model-ac>TMhelix</model-ac>
|
|
<locations>
|
|
<tmhmm-location start="40" end="62">
|
|
<location-fragments>
|
|
<tmhmm-location-fragment start="40" end="62" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</tmhmm-location>
|
|
</locations>
|
|
</tmhmm-match>
|
|
<tmhmm-match>
|
|
<signature ac="TMhelix" desc="Region of a membrane-bound protein predicted to be embedded in the membrane.">
|
|
<signature-library-release library="TMHMM" version="2.0c"/>
|
|
</signature>
|
|
<model-ac>TMhelix</model-ac>
|
|
<locations>
|
|
<tmhmm-location start="103" end="125">
|
|
<location-fragments>
|
|
<tmhmm-location-fragment start="103" end="125" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</tmhmm-location>
|
|
</locations>
|
|
</tmhmm-match>
|
|
<tmhmm-match>
|
|
<signature ac="TMhelix" desc="Region of a membrane-bound protein predicted to be embedded in the membrane.">
|
|
<signature-library-release library="TMHMM" version="2.0c"/>
|
|
</signature>
|
|
<model-ac>TMhelix</model-ac>
|
|
<locations>
|
|
<tmhmm-location start="13" end="35">
|
|
<location-fragments>
|
|
<tmhmm-location-fragment start="13" end="35" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</tmhmm-location>
|
|
</locations>
|
|
</tmhmm-match>
|
|
</matches>
|
|
</protein>
|
|
</orf>
|
|
<orf end="575" start="3" strand="ANTISENSE">
|
|
<protein>
|
|
<sequence md5="30ee8c8966dbb2002df5b565572e5e60">RRLSTKSSWVSRICALTIWRSSRLVVYSSSSRPWPTAALACLSAILVGRFLKPSAPKPAAIAPLLTRISSWPASCSIASCWVISFTLLRLRLPSSLVRLLVPTLNTMRLYFISRRRISVSFLLCALPSPFCSTSIISRTVCAGSRGLSRYSSTLRPYLSFTMFGRLLIISLIIICFTSLVSSMQSNAASST</sequence>
|
|
<xref id="ENA|AACH01000027|AACH01000027.2_23" name="ENA|AACH01000027|AACH01000027.2_23 [575 - 3] (REVERSE SENSE) Saccharomyces mikatae IFO 1815 YM4906-Contig2858, whole genome shotgun sequence."/>
|
|
<matches>
|
|
<phobius-match>
|
|
<signature ac="NON_CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region." name="Non cytoplasmic domain">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>NON_CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="138" end="156">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="138" end="156" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="TRANSMEMBRANE" desc="Region of a membrane-bound protein predicted to be embedded in the membrane." name="Transmembrane region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>TRANSMEMBRANE</model-ac>
|
|
<locations>
|
|
<phobius-location start="157" end="180">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="157" end="180" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="TRANSMEMBRANE" desc="Region of a membrane-bound protein predicted to be embedded in the membrane." name="Transmembrane region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>TRANSMEMBRANE</model-ac>
|
|
<locations>
|
|
<phobius-location start="71" end="90">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="71" end="90" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="TRANSMEMBRANE" desc="Region of a membrane-bound protein predicted to be embedded in the membrane." name="Transmembrane region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>TRANSMEMBRANE</model-ac>
|
|
<locations>
|
|
<phobius-location start="117" end="137">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="117" end="137" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm." name="Cytoplasmic domain">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="181" end="191">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="181" end="191" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm." name="Cytoplasmic domain">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="1" end="32">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="1" end="32" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm." name="Cytoplasmic domain">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="91" end="116">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="91" end="116" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="TRANSMEMBRANE" desc="Region of a membrane-bound protein predicted to be embedded in the membrane." name="Transmembrane region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>TRANSMEMBRANE</model-ac>
|
|
<locations>
|
|
<phobius-location start="33" end="51">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="33" end="51" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="NON_CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region." name="Non cytoplasmic domain">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>NON_CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="52" end="70">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="52" end="70" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<tmhmm-match>
|
|
<signature ac="TMhelix" desc="Region of a membrane-bound protein predicted to be embedded in the membrane.">
|
|
<signature-library-release library="TMHMM" version="2.0c"/>
|
|
</signature>
|
|
<model-ac>TMhelix</model-ac>
|
|
<locations>
|
|
<tmhmm-location start="118" end="140">
|
|
<location-fragments>
|
|
<tmhmm-location-fragment start="118" end="140" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</tmhmm-location>
|
|
</locations>
|
|
</tmhmm-match>
|
|
<tmhmm-match>
|
|
<signature ac="TMhelix" desc="Region of a membrane-bound protein predicted to be embedded in the membrane.">
|
|
<signature-library-release library="TMHMM" version="2.0c"/>
|
|
</signature>
|
|
<model-ac>TMhelix</model-ac>
|
|
<locations>
|
|
<tmhmm-location start="160" end="182">
|
|
<location-fragments>
|
|
<tmhmm-location-fragment start="160" end="182" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</tmhmm-location>
|
|
</locations>
|
|
</tmhmm-match>
|
|
</matches>
|
|
</protein>
|
|
</orf>
|
|
<orf end="631" start="425" strand="ANTISENSE">
|
|
<protein>
|
|
<sequence md5="7565b6084b425afa0336b4fe9ffa56f0">SESRRGSAARSAPDARFYSGVYPQNHPGSAESARSQSGAAAGWWYILPAAGPGPPPRSPVYPQFWSGVF</sequence>
|
|
<xref id="Bob_18" name="Bob_18 [391 - 185] (REVERSE SENSE)"/>
|
|
<xref id="ENA|AACH01000027|AACH01000027.2_19" name="ENA|AACH01000027|AACH01000027.2_19 [631 - 425] (REVERSE SENSE) Saccharomyces mikatae IFO 1815 YM4906-Contig2858, whole genome shotgun sequence."/>
|
|
<matches>
|
|
<mobidblite-match>
|
|
<signature ac="mobidb-lite" desc="consensus disorder prediction" name="disorder_prediction">
|
|
<signature-library-release library="MOBIDB_LITE" version="1.5"/>
|
|
</signature>
|
|
<model-ac>mobidb-lite</model-ac>
|
|
<locations>
|
|
<mobidblite-location sequence-feature="" start="1" end="34">
|
|
<location-fragments>
|
|
<mobidblite-location-fragment start="1" end="34" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</mobidblite-location>
|
|
</locations>
|
|
</mobidblite-match>
|
|
</matches>
|
|
</protein>
|
|
</orf>
|
|
<orf end="1102" start="965" strand="SENSE">
|
|
<protein>
|
|
<sequence md5="db6c3544d4c19cd406c7ddbe5e2bd763">LKRRKKPKMAAILWRRKKACAPRNSGWRFMRRARAAFGWIKARRKR</sequence>
|
|
<xref id="ENA|AACH01000027|AACH01000027.2_8" name="ENA|AACH01000027|AACH01000027.2_8 [965 - 1102] Saccharomyces mikatae IFO 1815 YM4906-Contig2858, whole genome shotgun sequence."/>
|
|
<xref id="Bob_7" name="Bob_7 [725 - 862]"/>
|
|
<matches/>
|
|
</protein>
|
|
</orf>
|
|
<orf end="1347" start="1" strand="SENSE">
|
|
<protein>
|
|
<sequence md5="fd0743a673ac69fb6e5c67a48f264dd5">LVLLAAFDCIDDTKLVKQIIISEIINSLPNIVNDKYGRKVLLYLLSPRDPAHTVREIIEVLQKGDGNAHSKKDTEIRRREMKYKRIVFKVGTSSLTNEDGSLSRSKVKDITQQLAMLHEAGHELILVSSGAIAAGFGALGFKKRPTKIADKQASAAVGQGLLLEEYTTNLLLRQIVSAQILLTQDDFVDKRRYKNAHQALSVLLNRGAIPIINENDSVVIDELKVGDNDTLSAQVAAMVQADLLVFLTDVDGLYTGNPNSDPRAKRLERIETINREIIDMAGGAGSSNGTGGMLTKIKAATIATESGVPVYICSSLKSDSMIEAAEETEDGSYFVAQEKGLRTQKQWLAFYAQSQGSIWVDKGAAEALSQYGKSLLLSGIVEAEGVFSYGDIVTVFDKESGKSLGKGRVQFGASALEDMLRSQKAKGVLIYRDDWISITPEIQLLFTEF</sequence>
|
|
<xref id="ENA|AACH01000027|AACH01000027.2_12" name="ENA|AACH01000027|AACH01000027.2_12 [1 - 1347] Saccharomyces mikatae IFO 1815 YM4906-Contig2858, whole genome shotgun sequence."/>
|
|
<matches>
|
|
<hmmer3-match evalue="1.6E-17" score="64.1">
|
|
<signature ac="PF08144" desc="CPL (NUC119) domain" name="CPL">
|
|
<entry ac="IPR012959" desc="CPL domain" name="CPL_dom" type="DOMAIN">
|
|
<go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0003723" name="RNA binding"/>
|
|
</entry>
|
|
<signature-library-release library="PFAM" version="31.0"/>
|
|
</signature>
|
|
<model-ac>PF08144</model-ac>
|
|
<locations>
|
|
<hmmer3-location env-end="86" env-start="33" post-processed="true" score="63.0" evalue="3.6E-17" hmm-start="1" hmm-end="52" hmm-length="143" hmm-bounds="N_TERMINAL_COMPLETE" start="33" end="82">
|
|
<location-fragments>
|
|
<hmmer3-location-fragment start="33" end="82" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</hmmer3-location>
|
|
</locations>
|
|
</hmmer3-match>
|
|
<hmmer3-match evalue="4.2E-134" score="445.2">
|
|
<signature ac="TIGR01027" desc="proB: glutamate 5-kinase" name="TIGR01027">
|
|
<entry ac="IPR005715" desc="Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase" name="Glu_5kinase/COase_Synthase" type="FAMILY">
|
|
<go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0006561" name="proline biosynthetic process"/>
|
|
<go-xref category="CELLULAR_COMPONENT" db="GO" id="GO:0005737" name="cytoplasm"/>
|
|
<pathway-xref db="KEGG" id="00332+2.7.2.11" name="Carbapenem biosynthesis"/>
|
|
<pathway-xref db="MetaCyc" id="PWY-3341" name="L-proline biosynthesis III"/>
|
|
<pathway-xref db="Reactome" id="R-HSA-70614" name="Amino acid synthesis and interconversion (transamination)"/>
|
|
<pathway-xref db="KEGG" id="00330+2.7.2.11" name="Arginine and proline metabolism"/>
|
|
<pathway-xref db="MetaCyc" id="PWY-6922" name="L-Ndelta-acetylornithine biosynthesis"/>
|
|
</entry>
|
|
<signature-library-release library="TIGRFAM" version="15.0"/>
|
|
</signature>
|
|
<model-ac>TIGR01027</model-ac>
|
|
<locations>
|
|
<hmmer3-location env-end="445" env-start="84" post-processed="false" score="444.9" evalue="5.1E-134" hmm-start="1" hmm-end="359" hmm-length="363" hmm-bounds="N_TERMINAL_COMPLETE" start="84" end="441">
|
|
<location-fragments>
|
|
<hmmer3-location-fragment start="84" end="441" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</hmmer3-location>
|
|
</locations>
|
|
</hmmer3-match>
|
|
<patternscan-match>
|
|
<signature ac="PS00902" desc="Glutamate 5-kinase signature." name="GLUTAMATE_5_KINASE">
|
|
<entry ac="IPR019797" desc="Glutamate 5-kinase, conserved site" name="Glutamate_5-kinase_CS" type="CONSERVED_SITE">
|
|
<go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0006561" name="proline biosynthetic process"/>
|
|
<go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0004349" name="glutamate 5-kinase activity"/>
|
|
<pathway-xref db="MetaCyc" id="PWY-3341" name="L-proline biosynthesis III"/>
|
|
<pathway-xref db="MetaCyc" id="PWY-6922" name="L-Ndelta-acetylornithine biosynthesis"/>
|
|
<pathway-xref db="KEGG" id="00330+2.7.2.11" name="Arginine and proline metabolism"/>
|
|
<pathway-xref db="Reactome" id="R-HSA-70614" name="Amino acid synthesis and interconversion (transamination)"/>
|
|
<pathway-xref db="KEGG" id="00332+2.7.2.11" name="Carbapenem biosynthesis"/>
|
|
</entry>
|
|
<signature-library-release library="PROSITE_PATTERNS" version="2018_02"/>
|
|
</signature>
|
|
<model-ac>PS00902</model-ac>
|
|
<locations>
|
|
<patternscan-location level="STRONG" start="286" end="303">
|
|
<location-fragments>
|
|
<patternscan-location-fragment start="286" end="303" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
<alignment>SsnGtGGMlTKIkAAtiA</alignment>
|
|
</patternscan-location>
|
|
</locations>
|
|
</patternscan-match>
|
|
<profilescan-match>
|
|
<signature ac="MF_00456" desc="Glutamate 5-kinase [proB]." name="ProB">
|
|
<entry ac="IPR005715" desc="Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase" name="Glu_5kinase/COase_Synthase" type="FAMILY">
|
|
<go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0006561" name="proline biosynthetic process"/>
|
|
<go-xref category="CELLULAR_COMPONENT" db="GO" id="GO:0005737" name="cytoplasm"/>
|
|
<pathway-xref db="KEGG" id="00332+2.7.2.11" name="Carbapenem biosynthesis"/>
|
|
<pathway-xref db="MetaCyc" id="PWY-3341" name="L-proline biosynthesis III"/>
|
|
<pathway-xref db="Reactome" id="R-HSA-70614" name="Amino acid synthesis and interconversion (transamination)"/>
|
|
<pathway-xref db="KEGG" id="00330+2.7.2.11" name="Arginine and proline metabolism"/>
|
|
<pathway-xref db="MetaCyc" id="PWY-6922" name="L-Ndelta-acetylornithine biosynthesis"/>
|
|
</entry>
|
|
<signature-library-release library="HAMAP" version="2018_03"/>
|
|
</signature>
|
|
<model-ac>MF_00456</model-ac>
|
|
<locations>
|
|
<profilescan-location score="35.882" start="84" end="339">
|
|
<location-fragments>
|
|
<profilescan-location-fragment start="84" end="339" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
<alignment>KRIVFKVGTSSLTNEDGSLSRSKVKDITQQLAMLHEAGHELILVSSGAIAAGFGALGFKKRPTKIADKQASAAVGQGLLLEEYTTNLLLRQIVSAQILLTQDDFVDKRRYKNAHQALSVLLNRGAIPIINENDSVVIDELKVGDNDTLSAQVAAMVQADLLVFLTDVDGLYTGNPNSDPRAKRLERIETINREIIDMAGGAGSSNGTGGMLTKIKAATIATESGVPVYICSSLKSDSMIEAAEETEDGSYFvAQEK</alignment>
|
|
</profilescan-location>
|
|
</locations>
|
|
</profilescan-match>
|
|
</matches>
|
|
</protein>
|
|
</orf>
|
|
<orf end="1159" start="893" strand="ANTISENSE">
|
|
<protein>
|
|
<sequence md5="195229409d45a86f04a5774d8353435b">TRLPLPQCRSAAGFCHTGSALPPRLYPPKCCPGSAHKTPATVSGCAGLFPAPQNSCHLRFLPPLQSCYRFSGCCKYTPARRFRSQWSPL</sequence>
|
|
<xref id="ENA|AACH01000027|AACH01000027.2_16" name="ENA|AACH01000027|AACH01000027.2_16 [1159 - 893] (REVERSE SENSE) Saccharomyces mikatae IFO 1815 YM4906-Contig2858, whole genome shotgun sequence."/>
|
|
<xref id="Bob_15" name="Bob_15 [919 - 653] (REVERSE SENSE)"/>
|
|
<matches/>
|
|
</protein>
|
|
</orf>
|
|
</nucleotide-sequence>
|
|
<nucleotide-sequence>
|
|
<sequence md5="b7a826e3596555c7b2cc957b748abec8">atgaaatataaacgcattgtgtttaaagtgggcaccagcagcctgaccaacgaagatggcagcctgagccgcagcaaagtgaaagatattacccagcagctggcgatgctgcatgaagcgggccatgaactgattctggtgagcagcggcgcgattgcggcgggctttggcgcgctgggctttaaaaaacgcccgaccaaaattgcggataaacaggcgagcgcggcggtgggccagggcctgctgctggaagaatataccaccaacctgctgctgcgccagattgtgagcgcgcagattctgctgacccaggatgattttgtggataaacgccgctataaaaacgcgcatcaggcgctgagcgtgctgctgaaccgcggcgcgattccgattattaacgaaaacgatagcgtggtgattgatgaactgaaagtgggcgataacgataccctgagcgcgcaggtggcggcgatggtgcaggcggatctgctggtgtttctgaccgatgtggatggcctgtataccggcaacccgaacagcgatccgcgcgcgaaacgcctggaacgcattgaaaccattaaccgcgaaattattgatatggcgggcggcgcgggcagcagcaacggcaccggcggcatgctgaccaaaattaaagcggcgaccattgcgaccgaaagcggcgtgccggtgtatatttgcagcagcctgaaaagcgatagcatgattgaagcggcggaagaaaccgaagatggcagctattttgtggcgcaggaaaaaggcctgcgcacccagaaacagtggctggcgttttatgcgcagagccagggcagcatttgggtggataaaggcgcggcggaagcgctgagccagtatggcaaaagcctgctgctgagcggcattgtggaagcggaaggcgtgtttagctatggcgatattgtgaccgtgtttgataaagaaagcggcaaaagcctgggcaaaggccgcgtgcagtttggcgcgagcgcgctggaagatatgctgcgcagccagaaagcgaaaggcgtgctgatttatcgcgatgattggattagcattaccccggaaattcagctgctgtttaccgaattt</sequence>
|
|
<xref id="Bob" name="Bob"/>
|
|
<orf end="862" start="725" strand="SENSE">
|
|
<protein>
|
|
<sequence md5="db6c3544d4c19cd406c7ddbe5e2bd763">LKRRKKPKMAAILWRRKKACAPRNSGWRFMRRARAAFGWIKARRKR</sequence>
|
|
<xref id="ENA|AACH01000027|AACH01000027.2_8" name="ENA|AACH01000027|AACH01000027.2_8 [965 - 1102] Saccharomyces mikatae IFO 1815 YM4906-Contig2858, whole genome shotgun sequence."/>
|
|
<xref id="Bob_7" name="Bob_7 [725 - 862]"/>
|
|
<matches/>
|
|
</protein>
|
|
</orf>
|
|
<orf end="1066" start="923" strand="ANTISENSE">
|
|
<protein>
|
|
<sequence md5="4ad9f9a33e6f315d884c4972ff7dba44">SNHRDKSARLSLSGCAAYLPARSRQTARGLCPGFCRFLYQTRSQYRHS</sequence>
|
|
<xref id="ENA|AACH01000027|AACH01000027.2_14" name="ENA|AACH01000027|AACH01000027.2_14 [1306 - 1163] (REVERSE SENSE) Saccharomyces mikatae IFO 1815 YM4906-Contig2858, whole genome shotgun sequence."/>
|
|
<xref id="Bob_13" name="Bob_13 [1066 - 923] (REVERSE SENSE)"/>
|
|
<matches/>
|
|
</protein>
|
|
</orf>
|
|
<orf end="640" start="503" strand="SENSE">
|
|
<protein>
|
|
<sequence md5="d976f88c85e612d94ad1bc52d1c99f36">PMWMACIPATRTAIRARNAWNALKPLTAKLLIWRAARAAATAPAAC</sequence>
|
|
<xref id="Bob_5" name="Bob_5 [503 - 640]"/>
|
|
<xref id="ENA|AACH01000027|AACH01000027.2_6" name="ENA|AACH01000027|AACH01000027.2_6 [743 - 880] Saccharomyces mikatae IFO 1815 YM4906-Contig2858, whole genome shotgun sequence."/>
|
|
<matches/>
|
|
</protein>
|
|
</orf>
|
|
<orf end="569" start="444" strand="SENSE">
|
|
<protein>
|
|
<sequence md5="bfcb80dc6b493236a44d89fdfbae48dd">RYPERAGGGDGAGGSAGVSDRCGWPVYRQPEQRSARETPGTH</sequence>
|
|
<xref id="ENA|AACH01000027|AACH01000027.2_5" name="ENA|AACH01000027|AACH01000027.2_5 [684 - 809] Saccharomyces mikatae IFO 1815 YM4906-Contig2858, whole genome shotgun sequence."/>
|
|
<xref id="Bob_4" name="Bob_4 [444 - 569]"/>
|
|
<matches>
|
|
<mobidblite-match>
|
|
<signature ac="mobidb-lite" desc="consensus disorder prediction" name="disorder_prediction">
|
|
<signature-library-release library="MOBIDB_LITE" version="1.5"/>
|
|
</signature>
|
|
<model-ac>mobidb-lite</model-ac>
|
|
<locations>
|
|
<mobidblite-location sequence-feature="" start="1" end="42">
|
|
<location-fragments>
|
|
<mobidblite-location-fragment start="1" end="42" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</mobidblite-location>
|
|
</locations>
|
|
</mobidblite-match>
|
|
</matches>
|
|
</protein>
|
|
</orf>
|
|
<orf end="391" start="185" strand="ANTISENSE">
|
|
<protein>
|
|
<sequence md5="7565b6084b425afa0336b4fe9ffa56f0">SESRRGSAARSAPDARFYSGVYPQNHPGSAESARSQSGAAAGWWYILPAAGPGPPPRSPVYPQFWSGVF</sequence>
|
|
<xref id="Bob_18" name="Bob_18 [391 - 185] (REVERSE SENSE)"/>
|
|
<xref id="ENA|AACH01000027|AACH01000027.2_19" name="ENA|AACH01000027|AACH01000027.2_19 [631 - 425] (REVERSE SENSE) Saccharomyces mikatae IFO 1815 YM4906-Contig2858, whole genome shotgun sequence."/>
|
|
<matches>
|
|
<mobidblite-match>
|
|
<signature ac="mobidb-lite" desc="consensus disorder prediction" name="disorder_prediction">
|
|
<signature-library-release library="MOBIDB_LITE" version="1.5"/>
|
|
</signature>
|
|
<model-ac>mobidb-lite</model-ac>
|
|
<locations>
|
|
<mobidblite-location sequence-feature="" start="1" end="34">
|
|
<location-fragments>
|
|
<mobidblite-location-fragment start="1" end="34" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</mobidblite-location>
|
|
</locations>
|
|
</mobidblite-match>
|
|
</matches>
|
|
</protein>
|
|
</orf>
|
|
<orf end="335" start="3" strand="ANTISENSE">
|
|
<protein>
|
|
<sequence md5="559991de8dd2f02601d311f496f8d6f0">RRLSTKSSWVSRICALTIWRSSRLVVYSSSSRPWPTAALACLSAILVGRFLKPSAPKPAAIAPLLTRISSWPASCSIASCWVISFTLLRLRLPSSLVRLLVPTLNTMRLYF</sequence>
|
|
<xref id="Bob_20" name="Bob_20 [335 - 3] (REVERSE SENSE)"/>
|
|
<matches>
|
|
<phobius-match>
|
|
<signature ac="TRANSMEMBRANE" desc="Region of a membrane-bound protein predicted to be embedded in the membrane." name="Transmembrane region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>TRANSMEMBRANE</model-ac>
|
|
<locations>
|
|
<phobius-location start="71" end="90">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="71" end="90" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm." name="Cytoplasmic domain">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="1" end="32">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="1" end="32" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm." name="Cytoplasmic domain">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="91" end="111">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="91" end="111" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="NON_CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region." name="Non cytoplasmic domain">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>NON_CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="52" end="70">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="52" end="70" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="TRANSMEMBRANE" desc="Region of a membrane-bound protein predicted to be embedded in the membrane." name="Transmembrane region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>TRANSMEMBRANE</model-ac>
|
|
<locations>
|
|
<phobius-location start="33" end="51">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="33" end="51" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
</matches>
|
|
</protein>
|
|
</orf>
|
|
<orf end="755" start="354" strand="ANTISENSE">
|
|
<protein>
|
|
<sequence md5="89345cdafdd357ad8b2bef1ecdfd7be2">LPSSVSSAASIMLSLFRLLQIYTGTPLSVAMVAALILVSMPPVPLLLPAPPAISIISRLMVSMRSRRFARGSLFGLPVYRPSTSVRNTSRSACTIAATCALRVSLSPTFSSSITTLSFSLIIGIAPRFSSTLSA</sequence>
|
|
<xref id="ENA|AACH01000027|AACH01000027.2_18" name="ENA|AACH01000027|AACH01000027.2_18 [995 - 594] (REVERSE SENSE) Saccharomyces mikatae IFO 1815 YM4906-Contig2858, whole genome shotgun sequence."/>
|
|
<xref id="Bob_17" name="Bob_17 [755 - 354] (REVERSE SENSE)"/>
|
|
<matches>
|
|
<phobius-match>
|
|
<signature ac="TRANSMEMBRANE" desc="Region of a membrane-bound protein predicted to be embedded in the membrane." name="Transmembrane region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>TRANSMEMBRANE</model-ac>
|
|
<locations>
|
|
<phobius-location start="45" end="61">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="45" end="61" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm." name="Cytoplasmic domain">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="1" end="20">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="1" end="20" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="NON_CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region." name="Non cytoplasmic domain">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>NON_CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="40" end="44">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="40" end="44" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm." name="Cytoplasmic domain">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="62" end="134">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="62" end="134" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="TRANSMEMBRANE" desc="Region of a membrane-bound protein predicted to be embedded in the membrane." name="Transmembrane region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>TRANSMEMBRANE</model-ac>
|
|
<locations>
|
|
<phobius-location start="21" end="39">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="21" end="39" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<tmhmm-match>
|
|
<signature ac="TMhelix" desc="Region of a membrane-bound protein predicted to be embedded in the membrane.">
|
|
<signature-library-release library="TMHMM" version="2.0c"/>
|
|
</signature>
|
|
<model-ac>TMhelix</model-ac>
|
|
<locations>
|
|
<tmhmm-location start="40" end="62">
|
|
<location-fragments>
|
|
<tmhmm-location-fragment start="40" end="62" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</tmhmm-location>
|
|
</locations>
|
|
</tmhmm-match>
|
|
<tmhmm-match>
|
|
<signature ac="TMhelix" desc="Region of a membrane-bound protein predicted to be embedded in the membrane.">
|
|
<signature-library-release library="TMHMM" version="2.0c"/>
|
|
</signature>
|
|
<model-ac>TMhelix</model-ac>
|
|
<locations>
|
|
<tmhmm-location start="103" end="125">
|
|
<location-fragments>
|
|
<tmhmm-location-fragment start="103" end="125" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</tmhmm-location>
|
|
</locations>
|
|
</tmhmm-match>
|
|
<tmhmm-match>
|
|
<signature ac="TMhelix" desc="Region of a membrane-bound protein predicted to be embedded in the membrane.">
|
|
<signature-library-release library="TMHMM" version="2.0c"/>
|
|
</signature>
|
|
<model-ac>TMhelix</model-ac>
|
|
<locations>
|
|
<tmhmm-location start="13" end="35">
|
|
<location-fragments>
|
|
<tmhmm-location-fragment start="13" end="35" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</tmhmm-location>
|
|
</locations>
|
|
</tmhmm-match>
|
|
</matches>
|
|
</protein>
|
|
</orf>
|
|
<orf end="577" start="398" strand="ANTISENSE">
|
|
<protein>
|
|
<sequence md5="11cd3179c2a0a321041f86fb81892cad">WFQCVPGVSRADRCSGCRYTGHPHRSETPADPPAPSPPPARSGYRYRPLSVHQSPRYRFR</sequence>
|
|
<xref id="Bob_16" name="Bob_16 [577 - 398] (REVERSE SENSE)"/>
|
|
<xref id="ENA|AACH01000027|AACH01000027.2_17" name="ENA|AACH01000027|AACH01000027.2_17 [817 - 638] (REVERSE SENSE) Saccharomyces mikatae IFO 1815 YM4906-Contig2858, whole genome shotgun sequence."/>
|
|
<matches>
|
|
<mobidblite-match>
|
|
<signature ac="mobidb-lite" desc="consensus disorder prediction" name="disorder_prediction">
|
|
<signature-library-release library="MOBIDB_LITE" version="1.5"/>
|
|
</signature>
|
|
<model-ac>mobidb-lite</model-ac>
|
|
<locations>
|
|
<mobidblite-location sequence-feature="" start="16" end="60">
|
|
<location-fragments>
|
|
<mobidblite-location-fragment start="16" end="60" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</mobidblite-location>
|
|
</locations>
|
|
</mobidblite-match>
|
|
<mobidblite-match>
|
|
<signature ac="mobidb-lite" desc="consensus disorder prediction" name="disorder_prediction">
|
|
<signature-library-release library="MOBIDB_LITE" version="1.5"/>
|
|
</signature>
|
|
<model-ac>mobidb-lite</model-ac>
|
|
<locations>
|
|
<mobidblite-location sequence-feature="Proline-rich" start="28" end="42">
|
|
<location-fragments>
|
|
<mobidblite-location-fragment start="28" end="42" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</mobidblite-location>
|
|
</locations>
|
|
</mobidblite-match>
|
|
</matches>
|
|
</protein>
|
|
</orf>
|
|
<orf end="919" start="653" strand="ANTISENSE">
|
|
<protein>
|
|
<sequence md5="195229409d45a86f04a5774d8353435b">TRLPLPQCRSAAGFCHTGSALPPRLYPPKCCPGSAHKTPATVSGCAGLFPAPQNSCHLRFLPPLQSCYRFSGCCKYTPARRFRSQWSPL</sequence>
|
|
<xref id="ENA|AACH01000027|AACH01000027.2_16" name="ENA|AACH01000027|AACH01000027.2_16 [1159 - 893] (REVERSE SENSE) Saccharomyces mikatae IFO 1815 YM4906-Contig2858, whole genome shotgun sequence."/>
|
|
<xref id="Bob_15" name="Bob_15 [919 - 653] (REVERSE SENSE)"/>
|
|
<matches/>
|
|
</protein>
|
|
</orf>
|
|
<orf end="1107" start="1" strand="SENSE">
|
|
<protein>
|
|
<sequence md5="bb3bde1de955af5b7f49a84ba2c4d4ae">MKYKRIVFKVGTSSLTNEDGSLSRSKVKDITQQLAMLHEAGHELILVSSGAIAAGFGALGFKKRPTKIADKQASAAVGQGLLLEEYTTNLLLRQIVSAQILLTQDDFVDKRRYKNAHQALSVLLNRGAIPIINENDSVVIDELKVGDNDTLSAQVAAMVQADLLVFLTDVDGLYTGNPNSDPRAKRLERIETINREIIDMAGGAGSSNGTGGMLTKIKAATIATESGVPVYICSSLKSDSMIEAAEETEDGSYFVAQEKGLRTQKQWLAFYAQSQGSIWVDKGAAEALSQYGKSLLLSGIVEAEGVFSYGDIVTVFDKESGKSLGKGRVQFGASALEDMLRSQKAKGVLIYRDDWISITPEIQLLFTEF</sequence>
|
|
<xref id="Bob_11" name="Bob_11 [1 - 1107]"/>
|
|
<matches>
|
|
<fingerprints-match evalue="8.3E-49" graphscan="IIIII">
|
|
<signature ac="PR00474" desc="Glutamate 5-kinase family signature" name="GLU5KINASE">
|
|
<entry ac="IPR001057" desc="Glutamate/acetylglutamate kinase" name="Glu/AcGlu_kinase" type="FAMILY">
|
|
<pathway-xref db="Reactome" id="R-HSA-70614" name="Amino acid synthesis and interconversion (transamination)"/>
|
|
</entry>
|
|
<signature-library-release library="PRINTS" version="42.0"/>
|
|
</signature>
|
|
<model-ac>PR00474</model-ac>
|
|
<locations>
|
|
<fingerprints-location motifNumber="3" pvalue="0.0" score="63.7" start="41" end="55">
|
|
<location-fragments>
|
|
<fingerprints-location-fragment start="41" end="55" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</fingerprints-location>
|
|
<fingerprints-location motifNumber="1" pvalue="0.0" score="39.46" start="75" end="103">
|
|
<location-fragments>
|
|
<fingerprints-location-fragment start="75" end="103" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</fingerprints-location>
|
|
<fingerprints-location motifNumber="5" pvalue="0.0" score="51.32" start="208" end="228">
|
|
<location-fragments>
|
|
<fingerprints-location-fragment start="208" end="228" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</fingerprints-location>
|
|
<fingerprints-location motifNumber="4" pvalue="0.0" score="47.14" start="115" end="136">
|
|
<location-fragments>
|
|
<fingerprints-location-fragment start="115" end="136" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</fingerprints-location>
|
|
<fingerprints-location motifNumber="2" pvalue="0.0" score="60.71" start="147" end="174">
|
|
<location-fragments>
|
|
<fingerprints-location-fragment start="147" end="174" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</fingerprints-location>
|
|
</locations>
|
|
</fingerprints-match>
|
|
<hmmer2-match evalue="1.1E-6" score="38.2">
|
|
<signature ac="SM00359" name="pua_5">
|
|
<entry ac="IPR002478" desc="PUA domain" name="PUA" type="DOMAIN">
|
|
<go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0003723" name="RNA binding"/>
|
|
</entry>
|
|
<signature-library-release library="SMART" version="7.1"/>
|
|
</signature>
|
|
<model-ac>SM00359</model-ac>
|
|
<locations>
|
|
<hmmer2-location score="38.2" evalue="1.1E-6" hmm-start="1" hmm-end="86" hmm-length="86" hmm-bounds="COMPLETE" start="276" end="347">
|
|
<location-fragments>
|
|
<hmmer2-location-fragment start="276" end="347" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</hmmer2-location>
|
|
</locations>
|
|
</hmmer2-match>
|
|
<hmmer3-match evalue="3.4E-134" score="446.5">
|
|
<signature ac="PIRSF000729" name="GK">
|
|
<entry ac="IPR011529" desc="Glutamate 5-kinase" name="Glu_5kinase" type="FAMILY">
|
|
<go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0004349" name="glutamate 5-kinase activity"/>
|
|
<go-xref category="CELLULAR_COMPONENT" db="GO" id="GO:0005737" name="cytoplasm"/>
|
|
<go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0006561" name="proline biosynthetic process"/>
|
|
<pathway-xref db="KEGG" id="00330+2.7.2.11" name="Arginine and proline metabolism"/>
|
|
<pathway-xref db="MetaCyc" id="PWY-3341" name="L-proline biosynthesis III"/>
|
|
<pathway-xref db="MetaCyc" id="PWY-6922" name="L-Ndelta-acetylornithine biosynthesis"/>
|
|
<pathway-xref db="KEGG" id="00332+2.7.2.11" name="Carbapenem biosynthesis"/>
|
|
</entry>
|
|
<signature-library-release library="PIRSF" version="3.02"/>
|
|
</signature>
|
|
<model-ac>PIRSF000729</model-ac>
|
|
<locations>
|
|
<hmmer3-location env-end="368" env-start="1" post-processed="false" score="446.3" evalue="3.8E-134" hmm-start="2" hmm-end="365" hmm-length="374" hmm-bounds="COMPLETE" start="1" end="368">
|
|
<location-fragments/>
|
|
</hmmer3-location>
|
|
</locations>
|
|
</hmmer3-match>
|
|
<hmmer3-match evalue="3.8E-16" score="58.7">
|
|
<signature ac="PF01472" desc="PUA domain" name="PUA">
|
|
<entry ac="IPR002478" desc="PUA domain" name="PUA" type="DOMAIN">
|
|
<go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0003723" name="RNA binding"/>
|
|
</entry>
|
|
<signature-library-release library="PFAM" version="31.0"/>
|
|
</signature>
|
|
<model-ac>PF01472</model-ac>
|
|
<locations>
|
|
<hmmer3-location env-end="349" env-start="276" post-processed="true" score="57.5" evalue="9.3E-16" hmm-start="1" hmm-end="64" hmm-length="74" hmm-bounds="N_TERMINAL_COMPLETE" start="276" end="341">
|
|
<location-fragments/>
|
|
</hmmer3-location>
|
|
</locations>
|
|
</hmmer3-match>
|
|
<hmmer3-match evalue="4.6E-42" score="144.2">
|
|
<signature ac="PF00696" desc="Amino acid kinase family" name="AA_kinase">
|
|
<entry ac="IPR001048" desc="Aspartate/glutamate/uridylate kinase" name="Asp/Glu/Uridylate_kinase" type="DOMAIN">
|
|
<pathway-xref db="Reactome" id="R-HSA-70614" name="Amino acid synthesis and interconversion (transamination)"/>
|
|
</entry>
|
|
<signature-library-release library="PFAM" version="31.0"/>
|
|
</signature>
|
|
<model-ac>PF00696</model-ac>
|
|
<locations>
|
|
<hmmer3-location env-end="234" env-start="4" post-processed="true" score="143.5" evalue="7.2E-42" hmm-start="1" hmm-end="241" hmm-length="241" hmm-bounds="COMPLETE" start="4" end="234">
|
|
<location-fragments/>
|
|
</hmmer3-location>
|
|
</locations>
|
|
</hmmer3-match>
|
|
<hmmer3-match evalue="3.7E-22" score="80.1">
|
|
<signature ac="G3DSA:2.30.130.10">
|
|
<entry ac="IPR036974" desc="PUA domain superfamily" name="PUA_sf" type="HOMOLOGOUS_SUPERFAMILY">
|
|
<go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0003723" name="RNA binding"/>
|
|
</entry>
|
|
<signature-library-release library="GENE3D" version="4.2.0"/>
|
|
</signature>
|
|
<model-ac>2cx0A02</model-ac>
|
|
<locations>
|
|
<hmmer3-location env-end="352" env-start="273" post-processed="true" score="76.7" evalue="4.3E-21" hmm-start="4" hmm-end="77" hmm-length="83" hmm-bounds="COMPLETE" start="273" end="352">
|
|
<location-fragments/>
|
|
</hmmer3-location>
|
|
</locations>
|
|
</hmmer3-match>
|
|
<hmmer3-match evalue="2.2E-134" score="446.2">
|
|
<signature ac="TIGR01027" desc="proB: glutamate 5-kinase" name="TIGR01027">
|
|
<entry ac="IPR005715" desc="Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase" name="Glu_5kinase/COase_Synthase" type="FAMILY">
|
|
<go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0006561" name="proline biosynthetic process"/>
|
|
<go-xref category="CELLULAR_COMPONENT" db="GO" id="GO:0005737" name="cytoplasm"/>
|
|
<pathway-xref db="KEGG" id="00332+2.7.2.11" name="Carbapenem biosynthesis"/>
|
|
<pathway-xref db="MetaCyc" id="PWY-3341" name="L-proline biosynthesis III"/>
|
|
<pathway-xref db="Reactome" id="R-HSA-70614" name="Amino acid synthesis and interconversion (transamination)"/>
|
|
<pathway-xref db="KEGG" id="00330+2.7.2.11" name="Arginine and proline metabolism"/>
|
|
<pathway-xref db="MetaCyc" id="PWY-6922" name="L-Ndelta-acetylornithine biosynthesis"/>
|
|
</entry>
|
|
<signature-library-release library="TIGRFAM" version="15.0"/>
|
|
</signature>
|
|
<model-ac>TIGR01027</model-ac>
|
|
<locations>
|
|
<hmmer3-location env-end="365" env-start="4" post-processed="false" score="446.0" evalue="2.5E-134" hmm-start="1" hmm-end="359" hmm-length="363" hmm-bounds="N_TERMINAL_COMPLETE" start="4" end="361">
|
|
<location-fragments/>
|
|
</hmmer3-location>
|
|
</locations>
|
|
</hmmer3-match>
|
|
<hmmer3-match evalue="1.0E-83" score="282.8">
|
|
<signature ac="G3DSA:3.40.1160.10">
|
|
<entry ac="IPR036393" desc="Acetylglutamate kinase-like superfamily" name="AceGlu_kinase-like_sf" type="HOMOLOGOUS_SUPERFAMILY"/>
|
|
<signature-library-release library="GENE3D" version="4.2.0"/>
|
|
</signature>
|
|
<model-ac>4q1tB01</model-ac>
|
|
<locations>
|
|
<hmmer3-location env-end="264" env-start="1" post-processed="true" score="282.5" evalue="1.3E-83" hmm-start="11" hmm-end="268" hmm-length="273" hmm-bounds="COMPLETE" start="1" end="264">
|
|
<location-fragments/>
|
|
</hmmer3-location>
|
|
</locations>
|
|
</hmmer3-match>
|
|
<panther-match evalue="3.8E-117" familyName="Not available" score="393.9">
|
|
<signature ac="PTHR43654:SF3" name="GLUTAMATE 5-KINASE">
|
|
<signature-library-release library="PANTHER" version="12.0"/>
|
|
</signature>
|
|
<model-ac>PTHR43654:SF3</model-ac>
|
|
<locations>
|
|
<panther-location env-start="1" env-end="357" hmm-start="10" hmm-end="349" hmm-length="377" hmm-bounds="COMPLETE" start="3" end="343">
|
|
<location-fragments>
|
|
<panther-location-fragment start="3" end="343" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</panther-location>
|
|
</locations>
|
|
</panther-match>
|
|
<panther-match evalue="3.8E-117" familyName="Not available" score="393.9">
|
|
<signature ac="PTHR43654" name="FAMILY NOT NAMED">
|
|
<signature-library-release library="PANTHER" version="12.0"/>
|
|
</signature>
|
|
<model-ac>PTHR43654</model-ac>
|
|
<locations>
|
|
<panther-location env-start="1" env-end="357" hmm-start="10" hmm-end="349" hmm-length="377" hmm-bounds="COMPLETE" start="3" end="343">
|
|
<location-fragments>
|
|
<panther-location-fragment start="3" end="343" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</panther-location>
|
|
</locations>
|
|
</panther-match>
|
|
<patternscan-match>
|
|
<signature ac="PS00902" desc="Glutamate 5-kinase signature." name="GLUTAMATE_5_KINASE">
|
|
<entry ac="IPR019797" desc="Glutamate 5-kinase, conserved site" name="Glutamate_5-kinase_CS" type="CONSERVED_SITE">
|
|
<go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0006561" name="proline biosynthetic process"/>
|
|
<go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0004349" name="glutamate 5-kinase activity"/>
|
|
<pathway-xref db="MetaCyc" id="PWY-3341" name="L-proline biosynthesis III"/>
|
|
<pathway-xref db="MetaCyc" id="PWY-6922" name="L-Ndelta-acetylornithine biosynthesis"/>
|
|
<pathway-xref db="KEGG" id="00330+2.7.2.11" name="Arginine and proline metabolism"/>
|
|
<pathway-xref db="Reactome" id="R-HSA-70614" name="Amino acid synthesis and interconversion (transamination)"/>
|
|
<pathway-xref db="KEGG" id="00332+2.7.2.11" name="Carbapenem biosynthesis"/>
|
|
</entry>
|
|
<signature-library-release library="PROSITE_PATTERNS" version="2018_02"/>
|
|
</signature>
|
|
<model-ac>PS00902</model-ac>
|
|
<locations>
|
|
<patternscan-location level="NONE" start="206" end="223">
|
|
<location-fragments>
|
|
<patternscan-location-fragment start="206" end="223" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
<alignment>Not available</alignment>
|
|
</patternscan-location>
|
|
</locations>
|
|
</patternscan-match>
|
|
<phobius-match>
|
|
<signature ac="CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm." name="Cytoplasmic domain">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="62" end="369">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="62" end="369" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="NON_CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region." name="Non cytoplasmic domain">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>NON_CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="1" end="43">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="1" end="43" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="TRANSMEMBRANE" desc="Region of a membrane-bound protein predicted to be embedded in the membrane." name="Transmembrane region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>TRANSMEMBRANE</model-ac>
|
|
<locations>
|
|
<phobius-location start="44" end="61">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="44" end="61" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<profilescan-match>
|
|
<signature ac="MF_00456" desc="Glutamate 5-kinase [proB]." name="ProB">
|
|
<entry ac="IPR005715" desc="Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase" name="Glu_5kinase/COase_Synthase" type="FAMILY">
|
|
<go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0006561" name="proline biosynthetic process"/>
|
|
<go-xref category="CELLULAR_COMPONENT" db="GO" id="GO:0005737" name="cytoplasm"/>
|
|
<pathway-xref db="KEGG" id="00332+2.7.2.11" name="Carbapenem biosynthesis"/>
|
|
<pathway-xref db="MetaCyc" id="PWY-3341" name="L-proline biosynthesis III"/>
|
|
<pathway-xref db="Reactome" id="R-HSA-70614" name="Amino acid synthesis and interconversion (transamination)"/>
|
|
<pathway-xref db="KEGG" id="00330+2.7.2.11" name="Arginine and proline metabolism"/>
|
|
<pathway-xref db="MetaCyc" id="PWY-6922" name="L-Ndelta-acetylornithine biosynthesis"/>
|
|
</entry>
|
|
<signature-library-release library="HAMAP" version="2018_03"/>
|
|
</signature>
|
|
<model-ac>MF_00456</model-ac>
|
|
<locations>
|
|
<profilescan-location score="35.882" start="4" end="259">
|
|
<location-fragments>
|
|
<profilescan-location-fragment start="4" end="259" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
<alignment>Not available</alignment>
|
|
</profilescan-location>
|
|
</locations>
|
|
</profilescan-match>
|
|
<profilescan-match>
|
|
<signature ac="PS50890" desc="PUA domain profile." name="PUA">
|
|
<entry ac="IPR002478" desc="PUA domain" name="PUA" type="DOMAIN">
|
|
<go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0003723" name="RNA binding"/>
|
|
</entry>
|
|
<signature-library-release library="PROSITE_PROFILES" version="2018_02"/>
|
|
</signature>
|
|
<model-ac>PS50890</model-ac>
|
|
<locations>
|
|
<profilescan-location score="15.593" start="275" end="355">
|
|
<location-fragments>
|
|
<profilescan-location-fragment start="275" end="355" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
<alignment>Not available</alignment>
|
|
</profilescan-location>
|
|
</locations>
|
|
</profilescan-match>
|
|
<superfamilyhmmer3-match evalue="1.7E-67">
|
|
<signature ac="SSF53633" name="Carbamate kinase-like">
|
|
<entry ac="IPR036393" desc="Acetylglutamate kinase-like superfamily" name="AceGlu_kinase-like_sf" type="HOMOLOGOUS_SUPERFAMILY"/>
|
|
<signature-library-release library="SUPERFAMILY" version="1.75"/>
|
|
</signature>
|
|
<model-ac>0051788</model-ac>
|
|
<locations>
|
|
<superfamilyhmmer3-location hmm-length="250" start="4" end="255">
|
|
<location-fragments/>
|
|
</superfamilyhmmer3-location>
|
|
</locations>
|
|
</superfamilyhmmer3-match>
|
|
<superfamilyhmmer3-match evalue="9.39E-14">
|
|
<signature ac="SSF88697" name="PUA domain-like">
|
|
<entry ac="IPR015947" desc="PUA-like superfamily" name="PUA-like_sf" type="HOMOLOGOUS_SUPERFAMILY"/>
|
|
<signature-library-release library="SUPERFAMILY" version="1.75"/>
|
|
</signature>
|
|
<model-ac>0043106</model-ac>
|
|
<locations>
|
|
<superfamilyhmmer3-location hmm-length="81" start="276" end="356">
|
|
<location-fragments/>
|
|
</superfamilyhmmer3-location>
|
|
</locations>
|
|
</superfamilyhmmer3-match>
|
|
</matches>
|
|
</protein>
|
|
</orf>
|
|
<orf end="286" start="143" strand="SENSE">
|
|
<protein>
|
|
<sequence md5="f721ded069c8a767dac17d73641c938d">AAARLRRALARWALKNARPKLRINRRARRWARACCWKNIPPTCCCARL</sequence>
|
|
<xref id="ENA|AACH01000027|AACH01000027.2_3" name="ENA|AACH01000027|AACH01000027.2_3 [383 - 526] Saccharomyces mikatae IFO 1815 YM4906-Contig2858, whole genome shotgun sequence."/>
|
|
<xref id="Bob_2" name="Bob_2 [143 - 286]"/>
|
|
<matches/>
|
|
</protein>
|
|
</orf>
|
|
<orf end="1107" start="1" strand="ANTISENSE">
|
|
<protein>
|
|
<sequence md5="f09e2a4df2ac62e73864c4908701ac94">KFGKQQLNFRGNANPIIAINQHAFRFLAAQHIFQRARAKLHAAFAQAFAAFFIKHGHNIAIAKHAFRFHNAAQQQAFAILAQRFRRAFIHPNAALALRIKRQPLFLGAQAFFLRHKIAAIFGFFRRFNHAIAFQAAANIHRHAAFGRNGRRFNFGQHAAGAVAAARAARHINNFAVNGFNAFQAFRARIAVRVAGIQAIHIGQKHQQIRLHHRRHLRAQGIVIAHFQFINHHAIVFVNNRNRAAVQQHAQRLMRVFIAAFIHKIILGQQNLRAHNLAQQQVGGIFFQQQALAHRRARLFIRNFGRAFFKAQRAKARRNRAAAHQNQFMARFMQHRQLLGNIFHFAAAQAAIFVGQAAGAHFKHNAFIFH</sequence>
|
|
<xref id="Bob_21" name="Bob_21 [1107 - 1] (REVERSE SENSE)"/>
|
|
<matches>
|
|
<tmhmm-match>
|
|
<signature ac="TMhelix" desc="Region of a membrane-bound protein predicted to be embedded in the membrane.">
|
|
<signature-library-release library="TMHMM" version="2.0c"/>
|
|
</signature>
|
|
<model-ac>TMhelix</model-ac>
|
|
<locations>
|
|
<tmhmm-location start="337" end="359">
|
|
<location-fragments>
|
|
<tmhmm-location-fragment start="337" end="359" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</tmhmm-location>
|
|
</locations>
|
|
</tmhmm-match>
|
|
</matches>
|
|
</protein>
|
|
</orf>
|
|
</nucleotide-sequence>
|
|
<nucleotide-sequence>
|
|
<sequence md5="29686f6963cfea16162d1676e6a17a76">atggaagtgaaaggcaaaaaaaaactgaccggcaaaggcaccaaaatgagccaggaaaaaagcaaatttcataaaaacaacgatagcggcagcagcaaaacctttccgaaaaaagtggtgaaagaaggcggcccgaaaattaccagcaaaaactttgaaaaaaccgcgaccaaaccgggcaaaaaaggcgtgaaacagtttaaaaacaaacagcagggcgatcgcattccgaaaaacaaatttcagcaggcgaacaaatttaaccagaaacgcaaatttcagccggatagcaaaagcgatgaaagcgcggcgaaaaaaccgaaatgggatgaatttaaaaaaaaaaaaaaagaactgaaacagagccgccagctgagcgataaaaccaactatgatattgtgattcgcgcgaaacagatttgggaaattctgcgccgcaaagattgcgataaagaaaaacgcgtgaaactgatgagcgatctgcagaaactgattcagggcaaaattaaaaccattgcgtttgcgcatgatagcacccgcgtgattcagtgctatattcagtttggcaacgaagaacagcgcaaacaggcgtttgaagaactgcgcggcgatctggtggaactgagcaaagcgaaatatagccgcaacattgtgaaaaaatttctgatgtatggcagcaaagcgcagattgcggaaattattcgcagctttaaaggccatgtgcgcaaactgctgcgccatgcggaagcgagcgcgattgtggaatatgcgtataacgataaagcgattctggaacagcgcaacatgctgaccgaagaactgtatggcaacacctttcagctgtataaaagcgcggatcatccgaccctggataaagtgctggaagtgcagccggaaaaactggaactgattatggatgaaatgaaacagattctgaccccgatggcgcagaaagaagcggtgattaaacatagcctggtgcataaagtgtttctggatttttttacctatgcgccgccgaaactgcgcagcgaaatgattgaagcgattcgcgaagcggtggtgtatctggcgcatacccatgatggcgcgcgcgtggcgatgtattgcctgtggcatggcaccccgaaagatcgcaaagtgattgtgaaaaccatgaaaacctatattgaaaaagtggcgaacggccagtatagccatctggtgctgctggcggcgtttgattgcattgatgataccaaactggtgaaacagattattattagcgaaattattaacagcctgccgaacattgtgaacgataaatatggccgcaaagtgctgctgtatctgctgagcccgcgcgatccggcgcataccgtgcgcgaaattattgaagtgctgcagaaaggcgatggcaacgcgcatagcaaaaaagataccgaaattcgccgccgcgaactgctggaaagcattagcccggcgctgctgagctatctgcagggccatgcgcaggaagtggtgctggataaaagcgcgtgcgtgctggtggcggatattctgggcaccgcgaccggcgatgtgcagccggcgatggatgcggtggcgagcctggcggcggcggaactgcatccgggcggcaaagatggcgaactgcatattgcggaacatccggcgggccatctggtgctgaaatggctgattgaacaggataaaaaaatgaaagaacgcggccgcgaaggctgctttgcgaaaaccctgattgaacgcgtgggcgtgaaaaacctgaaaagctgggcgagcgtgaaccgcggcgcgattattctgagcagcctgctgcagagcagcgatcaggaagtggcgaacaaagtgaaagcgggcctgaaaagcctgattccggcgctggaaaaaagcaaaaacaccagcaaaggcattgaaatgctgctggaaaaactgaccgcg</sequence>
|
|
<xref id="Henry" name="Henry"/>
|
|
<orf end="1829" start="1476" strand="ANTISENSE">
|
|
<protein>
|
|
<sequence md5="fc2b3263a3a18ea168a1ee89cf1272bb">SLLCSRLLRIIAPRFTLAQLFRFFTPTRSIRVFAKQPSRPRSFIFLSCSISHFSTRWPAGCSAICSSPSLPPGCSSAAARLATASIAGCTSPVAVPRISATSTHALLSSTTSCAWPCR</sequence>
|
|
<xref id="Henry_15" name="Henry_15 [1829 - 1476] (REVERSE SENSE)"/>
|
|
<matches/>
|
|
</protein>
|
|
</orf>
|
|
<orf end="697" start="509" strand="ANTISENSE">
|
|
<protein>
|
|
<sequence md5="b8a265c60a3275f8fc04c8d8bccee6c2">FPQSALCCHTSEIFSQCCGYISLCSVPPDRRAVLQTPVCAVLRCQTEYSTESRGCYHAQTQWF</sequence>
|
|
<xref id="Henry_25" name="Henry_25 [697 - 509] (REVERSE SENSE)"/>
|
|
<matches/>
|
|
</protein>
|
|
</orf>
|
|
<orf end="1669" start="1472" strand="SENSE">
|
|
<protein>
|
|
<sequence md5="15449a7476e6d2447814969114aea79d">AICRAMRRKWCWIKARACWWRIFWAPRPAMCSRRWMRWRAWRRRNCIRAAKMANCILRNIRRAIWC</sequence>
|
|
<xref id="Henry_9" name="Henry_9 [1472 - 1669]"/>
|
|
<matches>
|
|
<signalp-match>
|
|
<signature ac="SignalP-noTM" name="SignalP-noTM">
|
|
<signature-library-release library="SIGNALP_EUK" version="4.1"/>
|
|
</signature>
|
|
<model-ac>SignalP-noTM</model-ac>
|
|
<locations>
|
|
<signalp-location score="0.453" start="1" end="31">
|
|
<location-fragments>
|
|
<signalp-location-fragment start="1" end="31" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</signalp-location>
|
|
</locations>
|
|
</signalp-match>
|
|
</matches>
|
|
</protein>
|
|
</orf>
|
|
<orf end="1255" start="1007" strand="ANTISENSE">
|
|
<protein>
|
|
<sequence md5="90def147bbe9585b084c4ef9e3759c57">SVSPVWYHQCNQTPPAAPDGYTGRSPLFQYRFSWFSQSLCDLSGCHATGNTSPRARHHGYAPDTPPLRESLQSFRCAVSAAHR</sequence>
|
|
<xref id="Henry_21" name="Henry_21 [1255 - 1007] (REVERSE SENSE)"/>
|
|
<matches/>
|
|
</protein>
|
|
</orf>
|
|
<orf end="1941" start="1" strand="ANTISENSE">
|
|
<protein>
|
|
<sequence md5="e42a91ce16fca7d833e3f97581f08f3c">RGQFFQQHFNAFAGVFAFFQRRNQAFQARFHFVRHFLIAALQQAAQNNRAAVHARPAFQVFHAHAFNQGFRKAAFAAAFFHFFILFNQPFQHQMARRMFRNMQFAIFAARMQFRRRQARHRIHRRLHIAGRGAQNIRHQHARAFIQHHFLRMALQIAQQRRANAFQQFAAANFGIFFAMRVAIAFLQHFNNFAHGMRRIARAQQIQQHFAAIFIVHNVRQAVNNFANNNLFHQFGIINAIKRRQQHQMAILAVRHFFNIGFHGFHNHFAIFRGAMPQAIHRHARAIMGMRQIHHRFANRFNHFAAQFRRRIGKKIQKHFMHQAMFNHRFFLRHRGQNLFHFIHNQFQFFRLHFQHFIQGRMIRAFIQLKGVAIQFFGQHVALFQNRFIVIRIFHNRARFRMAQQFAHMAFKAANNFRNLRFAAIHQKFFHNVAAIFRFAQFHQIAAQFFKRLFALFFVAKLNIALNHAGAIMRKRNGFNFALNQFLQIAHQFHAFFFIAIFAAQNFPNLFRANHNIIVGFIAQLAALFQFFFFFFKFIPFRFFRRAFIAFAIRLKFAFLVKFVRLLKFVFRNAIALLFVFKLFHAFFARFGRGFFKVFAGNFRAAFFHHFFRKGFAAAAIVVFMKFAFFLAHFGAFAGQFFFAFHFH</sequence>
|
|
<xref id="Henry_31" name="Henry_31 [1941 - 1] (REVERSE SENSE)"/>
|
|
<matches>
|
|
<phobius-match>
|
|
<signature ac="TRANSMEMBRANE" desc="Region of a membrane-bound protein predicted to be embedded in the membrane." name="Transmembrane region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>TRANSMEMBRANE</model-ac>
|
|
<locations>
|
|
<phobius-location start="547" end="566">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="547" end="566" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="NON_CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region." name="Non cytoplasmic domain">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>NON_CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="1" end="72">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="1" end="72" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="TRANSMEMBRANE" desc="Region of a membrane-bound protein predicted to be embedded in the membrane." name="Transmembrane region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>TRANSMEMBRANE</model-ac>
|
|
<locations>
|
|
<phobius-location start="168" end="189">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="168" end="189" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm." name="Cytoplasmic domain">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="472" end="491">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="472" end="491" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="TRANSMEMBRANE" desc="Region of a membrane-bound protein predicted to be embedded in the membrane." name="Transmembrane region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>TRANSMEMBRANE</model-ac>
|
|
<locations>
|
|
<phobius-location start="492" end="510">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="492" end="510" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm." name="Cytoplasmic domain">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="536" end="546">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="536" end="546" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="TRANSMEMBRANE" desc="Region of a membrane-bound protein predicted to be embedded in the membrane." name="Transmembrane region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>TRANSMEMBRANE</model-ac>
|
|
<locations>
|
|
<phobius-location start="572" end="595">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="572" end="595" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="TRANSMEMBRANE" desc="Region of a membrane-bound protein predicted to be embedded in the membrane." name="Transmembrane region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>TRANSMEMBRANE</model-ac>
|
|
<locations>
|
|
<phobius-location start="73" end="90">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="73" end="90" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm." name="Cytoplasmic domain">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="596" end="614">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="596" end="614" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm." name="Cytoplasmic domain">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="91" end="167">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="91" end="167" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="TRANSMEMBRANE" desc="Region of a membrane-bound protein predicted to be embedded in the membrane." name="Transmembrane region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>TRANSMEMBRANE</model-ac>
|
|
<locations>
|
|
<phobius-location start="615" end="642">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="615" end="642" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="NON_CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region." name="Non cytoplasmic domain">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>NON_CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="643" end="647">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="643" end="647" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="TRANSMEMBRANE" desc="Region of a membrane-bound protein predicted to be embedded in the membrane." name="Transmembrane region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>TRANSMEMBRANE</model-ac>
|
|
<locations>
|
|
<phobius-location start="516" end="535">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="516" end="535" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="NON_CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region." name="Non cytoplasmic domain">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>NON_CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="567" end="571">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="567" end="571" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="NON_CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region." name="Non cytoplasmic domain">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>NON_CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="511" end="515">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="511" end="515" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="TRANSMEMBRANE" desc="Region of a membrane-bound protein predicted to be embedded in the membrane." name="Transmembrane region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>TRANSMEMBRANE</model-ac>
|
|
<locations>
|
|
<phobius-location start="452" end="471">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="452" end="471" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="NON_CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region." name="Non cytoplasmic domain">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>NON_CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="190" end="451">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="190" end="451" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<tmhmm-match>
|
|
<signature ac="TMhelix" desc="Region of a membrane-bound protein predicted to be embedded in the membrane.">
|
|
<signature-library-release library="TMHMM" version="2.0c"/>
|
|
</signature>
|
|
<model-ac>TMhelix</model-ac>
|
|
<locations>
|
|
<tmhmm-location start="444" end="466">
|
|
<location-fragments>
|
|
<tmhmm-location-fragment start="444" end="466" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</tmhmm-location>
|
|
</locations>
|
|
</tmhmm-match>
|
|
<tmhmm-match>
|
|
<signature ac="TMhelix" desc="Region of a membrane-bound protein predicted to be embedded in the membrane.">
|
|
<signature-library-release library="TMHMM" version="2.0c"/>
|
|
</signature>
|
|
<model-ac>TMhelix</model-ac>
|
|
<locations>
|
|
<tmhmm-location start="568" end="590">
|
|
<location-fragments>
|
|
<tmhmm-location-fragment start="568" end="590" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</tmhmm-location>
|
|
</locations>
|
|
</tmhmm-match>
|
|
<tmhmm-match>
|
|
<signature ac="TMhelix" desc="Region of a membrane-bound protein predicted to be embedded in the membrane.">
|
|
<signature-library-release library="TMHMM" version="2.0c"/>
|
|
</signature>
|
|
<model-ac>TMhelix</model-ac>
|
|
<locations>
|
|
<tmhmm-location start="516" end="538">
|
|
<location-fragments>
|
|
<tmhmm-location-fragment start="516" end="538" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</tmhmm-location>
|
|
</locations>
|
|
</tmhmm-match>
|
|
<tmhmm-match>
|
|
<signature ac="TMhelix" desc="Region of a membrane-bound protein predicted to be embedded in the membrane.">
|
|
<signature-library-release library="TMHMM" version="2.0c"/>
|
|
</signature>
|
|
<model-ac>TMhelix</model-ac>
|
|
<locations>
|
|
<tmhmm-location start="479" end="501">
|
|
<location-fragments>
|
|
<tmhmm-location-fragment start="479" end="501" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</tmhmm-location>
|
|
</locations>
|
|
</tmhmm-match>
|
|
<tmhmm-match>
|
|
<signature ac="TMhelix" desc="Region of a membrane-bound protein predicted to be embedded in the membrane.">
|
|
<signature-library-release library="TMHMM" version="2.0c"/>
|
|
</signature>
|
|
<model-ac>TMhelix</model-ac>
|
|
<locations>
|
|
<tmhmm-location start="73" end="90">
|
|
<location-fragments>
|
|
<tmhmm-location-fragment start="73" end="90" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</tmhmm-location>
|
|
</locations>
|
|
</tmhmm-match>
|
|
<tmhmm-match>
|
|
<signature ac="TMhelix" desc="Region of a membrane-bound protein predicted to be embedded in the membrane.">
|
|
<signature-library-release library="TMHMM" version="2.0c"/>
|
|
</signature>
|
|
<model-ac>TMhelix</model-ac>
|
|
<locations>
|
|
<tmhmm-location start="614" end="636">
|
|
<location-fragments>
|
|
<tmhmm-location-fragment start="614" end="636" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</tmhmm-location>
|
|
</locations>
|
|
</tmhmm-match>
|
|
<tmhmm-match>
|
|
<signature ac="TMhelix" desc="Region of a membrane-bound protein predicted to be embedded in the membrane.">
|
|
<signature-library-release library="TMHMM" version="2.0c"/>
|
|
</signature>
|
|
<model-ac>TMhelix</model-ac>
|
|
<locations>
|
|
<tmhmm-location start="168" end="190">
|
|
<location-fragments>
|
|
<tmhmm-location-fragment start="168" end="190" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</tmhmm-location>
|
|
</locations>
|
|
</tmhmm-match>
|
|
</matches>
|
|
</protein>
|
|
</orf>
|
|
<orf end="1941" start="1" strand="SENSE">
|
|
<protein>
|
|
<sequence md5="1fb3569701c50e369fa112ac96b5e459">MEVKGKKKLTGKGTKMSQEKSKFHKNNDSGSSKTFPKKVVKEGGPKITSKNFEKTATKPGKKGVKQFKNKQQGDRIPKNKFQQANKFNQKRKFQPDSKSDESAAKKPKWDEFKKKKKELKQSRQLSDKTNYDIVIRAKQIWEILRRKDCDKEKRVKLMSDLQKLIQGKIKTIAFAHDSTRVIQCYIQFGNEEQRKQAFEELRGDLVELSKAKYSRNIVKKFLMYGSKAQIAEIIRSFKGHVRKLLRHAEASAIVEYAYNDKAILEQRNMLTEELYGNTFQLYKSADHPTLDKVLEVQPEKLELIMDEMKQILTPMAQKEAVIKHSLVHKVFLDFFTYAPPKLRSEMIEAIREAVVYLAHTHDGARVAMYCLWHGTPKDRKVIVKTMKTYIEKVANGQYSHLVLLAAFDCIDDTKLVKQIIISEIINSLPNIVNDKYGRKVLLYLLSPRDPAHTVREIIEVLQKGDGNAHSKKDTEIRRRELLESISPALLSYLQGHAQEVVLDKSACVLVADILGTATGDVQPAMDAVASLAAAELHPGGKDGELHIAEHPAGHLVLKWLIEQDKKMKERGREGCFAKTLIERVGVKNLKSWASVNRGAIILSSLLQSSDQEVANKVKAGLKSLIPALEKSKNTSKGIEMLLEKLTA</sequence>
|
|
<xref id="Henry_12" name="Henry_12 [1 - 1941]"/>
|
|
<matches>
|
|
<hmmer2-match evalue="1.6E-34" score="130.7">
|
|
<signature ac="SM00025" name="pum_5">
|
|
<entry ac="IPR001313" desc="Pumilio RNA-binding repeat" name="Pumilio_RNA-bd_rpt" type="REPEAT">
|
|
<go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0003723" name="RNA binding"/>
|
|
</entry>
|
|
<signature-library-release library="SMART" version="7.1"/>
|
|
</signature>
|
|
<model-ac>SM00025</model-ac>
|
|
<locations>
|
|
<hmmer2-location score="28.3" evalue="0.0011" hmm-start="1" hmm-end="39" hmm-length="39" hmm-bounds="COMPLETE" start="200" end="235">
|
|
<location-fragments>
|
|
<hmmer2-location-fragment start="200" end="235" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</hmmer2-location>
|
|
<hmmer2-location score="25.4" evalue="0.0082" hmm-start="1" hmm-end="39" hmm-length="39" hmm-bounds="COMPLETE" start="164" end="199">
|
|
<location-fragments>
|
|
<hmmer2-location-fragment start="164" end="199" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</hmmer2-location>
|
|
<hmmer2-location score="22.1" evalue="0.079" hmm-start="1" hmm-end="39" hmm-length="39" hmm-bounds="COMPLETE" start="423" end="459">
|
|
<location-fragments>
|
|
<hmmer2-location-fragment start="423" end="459" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</hmmer2-location>
|
|
<hmmer2-location score="16.0" evalue="3.9" hmm-start="1" hmm-end="39" hmm-length="39" hmm-bounds="COMPLETE" start="236" end="272">
|
|
<location-fragments>
|
|
<hmmer2-location-fragment start="236" end="272" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</hmmer2-location>
|
|
<hmmer2-location score="26.2" evalue="0.0045" hmm-start="1" hmm-end="39" hmm-length="39" hmm-bounds="COMPLETE" start="349" end="384">
|
|
<location-fragments>
|
|
<hmmer2-location-fragment start="349" end="384" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</hmmer2-location>
|
|
<hmmer2-location score="12.8" evalue="10.0" hmm-start="1" hmm-end="39" hmm-length="39" hmm-bounds="COMPLETE" start="385" end="421">
|
|
<location-fragments>
|
|
<hmmer2-location-fragment start="385" end="421" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</hmmer2-location>
|
|
</locations>
|
|
</hmmer2-match>
|
|
<hmmer3-match evalue="3.6E-53" score="179.7">
|
|
<signature ac="PF08144" desc="CPL (NUC119) domain" name="CPL">
|
|
<entry ac="IPR012959" desc="CPL domain" name="CPL_dom" type="DOMAIN">
|
|
<go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0003723" name="RNA binding"/>
|
|
</entry>
|
|
<signature-library-release library="PFAM" version="31.0"/>
|
|
</signature>
|
|
<model-ac>PF08144</model-ac>
|
|
<locations>
|
|
<hmmer3-location env-end="573" env-start="433" post-processed="true" score="173.2" evalue="3.5E-51" hmm-start="1" hmm-end="141" hmm-length="143" hmm-bounds="N_TERMINAL_COMPLETE" start="433" end="571">
|
|
<location-fragments/>
|
|
</hmmer3-location>
|
|
</locations>
|
|
</hmmer3-match>
|
|
<hmmer3-match evalue="8.1E-70" score="237.5">
|
|
<signature ac="G3DSA:1.25.10.10">
|
|
<entry ac="IPR011989" desc="Armadillo-like helical" name="ARM-like" type="HOMOLOGOUS_SUPERFAMILY"/>
|
|
<signature-library-release library="GENE3D" version="4.2.0"/>
|
|
</signature>
|
|
<model-ac>3k49A00</model-ac>
|
|
<locations>
|
|
<hmmer3-location env-end="321" env-start="135" post-processed="true" score="127.0" evalue="3.0E-36" hmm-start="5" hmm-end="182" hmm-length="369" hmm-bounds="N_TERMINAL_COMPLETE" start="135" end="320">
|
|
<location-fragments/>
|
|
</hmmer3-location>
|
|
</locations>
|
|
</hmmer3-match>
|
|
<mobidblite-match>
|
|
<signature ac="mobidb-lite" desc="consensus disorder prediction" name="disorder_prediction">
|
|
<signature-library-release library="MOBIDB_LITE" version="1.5"/>
|
|
</signature>
|
|
<model-ac>mobidb-lite</model-ac>
|
|
<locations>
|
|
<mobidblite-location sequence-feature="Polyampholyte" start="91" end="108">
|
|
<location-fragments>
|
|
<mobidblite-location-fragment start="91" end="108" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</mobidblite-location>
|
|
<mobidblite-location sequence-feature="Polar" start="76" end="90">
|
|
<location-fragments>
|
|
<mobidblite-location-fragment start="76" end="90" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</mobidblite-location>
|
|
<mobidblite-location sequence-feature="Polyampholyte" start="1" end="27">
|
|
<location-fragments>
|
|
<mobidblite-location-fragment start="1" end="27" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</mobidblite-location>
|
|
<mobidblite-location start="1" end="108">
|
|
<location-fragments>
|
|
<mobidblite-location-fragment start="1" end="108" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</mobidblite-location>
|
|
</locations>
|
|
</mobidblite-match>
|
|
<mobidblite-match>
|
|
<signature ac="mobidb-lite" desc="consensus disorder prediction" name="disorder_prediction">
|
|
<signature-library-release library="MOBIDB_LITE" version="1.5"/>
|
|
</signature>
|
|
<model-ac>mobidb-lite</model-ac>
|
|
<locations>
|
|
<mobidblite-location sequence-feature="Polyampholyte" start="1" end="27">
|
|
<location-fragments>
|
|
<mobidblite-location-fragment start="1" end="27" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</mobidblite-location>
|
|
</locations>
|
|
</mobidblite-match>
|
|
<mobidblite-match>
|
|
<signature ac="mobidb-lite" desc="consensus disorder prediction" name="disorder_prediction">
|
|
<signature-library-release library="MOBIDB_LITE" version="1.5"/>
|
|
</signature>
|
|
<model-ac>mobidb-lite</model-ac>
|
|
<locations>
|
|
<mobidblite-location sequence-feature="Polyampholyte" start="91" end="108">
|
|
<location-fragments>
|
|
<mobidblite-location-fragment start="91" end="108" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</mobidblite-location>
|
|
</locations>
|
|
</mobidblite-match>
|
|
<mobidblite-match>
|
|
<signature ac="mobidb-lite" desc="consensus disorder prediction" name="disorder_prediction">
|
|
<signature-library-release library="MOBIDB_LITE" version="1.5"/>
|
|
</signature>
|
|
<model-ac>mobidb-lite</model-ac>
|
|
<locations>
|
|
<mobidblite-location sequence-feature="" start="1" end="108">
|
|
<location-fragments>
|
|
<mobidblite-location-fragment start="1" end="108" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</mobidblite-location>
|
|
</locations>
|
|
</mobidblite-match>
|
|
<mobidblite-match>
|
|
<signature ac="mobidb-lite" desc="consensus disorder prediction" name="disorder_prediction">
|
|
<signature-library-release library="MOBIDB_LITE" version="1.5"/>
|
|
</signature>
|
|
<model-ac>mobidb-lite</model-ac>
|
|
<locations>
|
|
<mobidblite-location sequence-feature="Polar" start="76" end="90">
|
|
<location-fragments>
|
|
<mobidblite-location-fragment start="76" end="90" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</mobidblite-location>
|
|
</locations>
|
|
</mobidblite-match>
|
|
<panther-match evalue="4.3E-242" familyName="Not available" score="807.4">
|
|
<signature ac="PTHR13389" name="UNCHARACTERIZED">
|
|
<signature-library-release library="PANTHER" version="12.0"/>
|
|
</signature>
|
|
<model-ac>PTHR13389</model-ac>
|
|
<locations>
|
|
<panther-location env-start="1" env-end="647" hmm-start="1" hmm-end="609" hmm-length="611" hmm-bounds="COMPLETE" start="1" end="646">
|
|
<location-fragments>
|
|
<panther-location-fragment start="1" end="646" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</panther-location>
|
|
</locations>
|
|
</panther-match>
|
|
<profilescan-match>
|
|
<signature ac="PS50302" desc="Pumilio RNA-binding repeat profile." name="PUM">
|
|
<entry ac="IPR001313" desc="Pumilio RNA-binding repeat" name="Pumilio_RNA-bd_rpt" type="REPEAT">
|
|
<go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0003723" name="RNA binding"/>
|
|
</entry>
|
|
<signature-library-release library="PROSITE_PROFILES" version="2018_02"/>
|
|
</signature>
|
|
<model-ac>PS50302</model-ac>
|
|
<locations>
|
|
<profilescan-location score="6.587" start="163" end="199">
|
|
<location-fragments>
|
|
<profilescan-location-fragment start="163" end="199" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
<alignment>Not available</alignment>
|
|
</profilescan-location>
|
|
<profilescan-location score="4.651" start="236" end="271">
|
|
<location-fragments>
|
|
<profilescan-location-fragment start="236" end="271" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
<alignment>Not available</alignment>
|
|
</profilescan-location>
|
|
<profilescan-location score="4.511" start="385" end="422">
|
|
<location-fragments>
|
|
<profilescan-location-fragment start="385" end="422" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
<alignment>Not available</alignment>
|
|
</profilescan-location>
|
|
<profilescan-location score="4.604" start="492" end="530">
|
|
<location-fragments>
|
|
<profilescan-location-fragment start="492" end="530" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
<alignment>Not available</alignment>
|
|
</profilescan-location>
|
|
<profilescan-location score="6.144" start="349" end="384">
|
|
<location-fragments>
|
|
<profilescan-location-fragment start="349" end="384" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
<alignment>Not available</alignment>
|
|
</profilescan-location>
|
|
<profilescan-location score="8.337" start="423" end="459">
|
|
<location-fragments>
|
|
<profilescan-location-fragment start="423" end="459" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
<alignment>Not available</alignment>
|
|
</profilescan-location>
|
|
<profilescan-location score="8.174" start="200" end="235">
|
|
<location-fragments>
|
|
<profilescan-location-fragment start="200" end="235" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
<alignment>Not available</alignment>
|
|
</profilescan-location>
|
|
</locations>
|
|
</profilescan-match>
|
|
<profilescan-match>
|
|
<signature ac="PS50303" desc="Pumilio homology domain (PUM-HD) profile." name="PUM_HD">
|
|
<entry ac="IPR033133" desc="Pumilio homology domain" name="PUM-HD" type="DOMAIN">
|
|
<go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0003723" name="RNA binding"/>
|
|
</entry>
|
|
<signature-library-release library="PROSITE_PROFILES" version="2018_02"/>
|
|
</signature>
|
|
<model-ac>PS50303</model-ac>
|
|
<locations>
|
|
<profilescan-location score="46.174" start="136" end="489">
|
|
<location-fragments>
|
|
<profilescan-location-fragment start="136" end="489" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
<alignment>Not available</alignment>
|
|
</profilescan-location>
|
|
</locations>
|
|
</profilescan-match>
|
|
<superfamilyhmmer3-match evalue="1.09E-8">
|
|
<signature ac="SSF48371" name="ARM repeat">
|
|
<entry ac="IPR016024" desc="Armadillo-type fold" name="ARM-type_fold" type="HOMOLOGOUS_SUPERFAMILY"/>
|
|
<signature-library-release library="SUPERFAMILY" version="1.75"/>
|
|
</signature>
|
|
<model-ac>0048121</model-ac>
|
|
<locations>
|
|
<superfamilyhmmer3-location hmm-length="339" start="488" end="645">
|
|
<location-fragments/>
|
|
</superfamilyhmmer3-location>
|
|
</locations>
|
|
</superfamilyhmmer3-match>
|
|
<superfamilyhmmer3-match evalue="1.69E-77">
|
|
<signature ac="SSF48371" name="ARM repeat">
|
|
<entry ac="IPR016024" desc="Armadillo-type fold" name="ARM-type_fold" type="HOMOLOGOUS_SUPERFAMILY"/>
|
|
<signature-library-release library="SUPERFAMILY" version="1.75"/>
|
|
</signature>
|
|
<model-ac>0048121</model-ac>
|
|
<locations>
|
|
<superfamilyhmmer3-location hmm-length="339" start="145" end="478">
|
|
<location-fragments/>
|
|
</superfamilyhmmer3-location>
|
|
</locations>
|
|
</superfamilyhmmer3-match>
|
|
</matches>
|
|
</protein>
|
|
</orf>
|
|
<orf end="1798" start="1457" strand="ANTISENSE">
|
|
<protein>
|
|
<sequence md5="76b6ef4eadb8d1e3632242031478e706">SRRGSRSPSFSGFSRPRVQSGFSQSSLRGRVLSFFYPVQSAISAPDGPPDVPQYAVRHLCRPDAVPPPPGSPPHPSPAAHRRSRCPEYPPPARTRFYPAPLPAHGPADSSAAPG</sequence>
|
|
<xref id="Henry_16" name="Henry_16 [1798 - 1457] (REVERSE SENSE)"/>
|
|
<matches>
|
|
<mobidblite-match>
|
|
<signature ac="mobidb-lite" desc="consensus disorder prediction" name="disorder_prediction">
|
|
<signature-library-release library="MOBIDB_LITE" version="1.5"/>
|
|
</signature>
|
|
<model-ac>mobidb-lite</model-ac>
|
|
<locations>
|
|
<mobidblite-location sequence-feature="" start="60" end="114">
|
|
<location-fragments>
|
|
<mobidblite-location-fragment start="60" end="114" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</mobidblite-location>
|
|
</locations>
|
|
</mobidblite-match>
|
|
<mobidblite-match>
|
|
<signature ac="mobidb-lite" desc="consensus disorder prediction" name="disorder_prediction">
|
|
<signature-library-release library="MOBIDB_LITE" version="1.5"/>
|
|
</signature>
|
|
<model-ac>mobidb-lite</model-ac>
|
|
<locations>
|
|
<mobidblite-location sequence-feature="Proline-rich" start="62" end="76">
|
|
<location-fragments>
|
|
<mobidblite-location-fragment start="62" end="76" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</mobidblite-location>
|
|
</locations>
|
|
</mobidblite-match>
|
|
</matches>
|
|
</protein>
|
|
</orf>
|
|
<orf end="242" start="72" strand="ANTISENSE">
|
|
<protein>
|
|
<sequence md5="5b44354f03f8dfb44a81f086e4209a22">NLFFGMRSPCCLFLNCFTPFLPGLVAVFSKFLLVIFGPPSFTTFFGKVLLLPLSLFL</sequence>
|
|
<xref id="Henry_29" name="Henry_29 [242 - 72] (REVERSE SENSE)"/>
|
|
<matches>
|
|
<phobius-match>
|
|
<signature ac="NON_CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region." name="Non cytoplasmic domain">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>NON_CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="37" end="57">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="37" end="57" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="TRANSMEMBRANE" desc="Region of a membrane-bound protein predicted to be embedded in the membrane." name="Transmembrane region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>TRANSMEMBRANE</model-ac>
|
|
<locations>
|
|
<phobius-location start="12" end="36">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="12" end="36" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm." name="Cytoplasmic domain">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="1" end="11">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="1" end="11" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<tmhmm-match>
|
|
<signature ac="TMhelix" desc="Region of a membrane-bound protein predicted to be embedded in the membrane.">
|
|
<signature-library-release library="TMHMM" version="2.0c"/>
|
|
</signature>
|
|
<model-ac>TMhelix</model-ac>
|
|
<locations>
|
|
<tmhmm-location start="13" end="35">
|
|
<location-fragments>
|
|
<tmhmm-location-fragment start="13" end="35" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</tmhmm-location>
|
|
</locations>
|
|
</tmhmm-match>
|
|
</matches>
|
|
</protein>
|
|
</orf>
|
|
<orf end="836" start="561" strand="ANTISENSE">
|
|
<protein>
|
|
<sequence md5="c6a4f93efbee1f5ce9a89d1378b7b93f">KVLPYSSSVSMLRCSRIALSLYAYSTIALASAWRSSLRTWPLKLRIISAICALLPYIRNFFTMLRLYFALLSSTRSPRSSSNACLRCSSLPN</sequence>
|
|
<xref id="Henry_24" name="Henry_24 [836 - 561] (REVERSE SENSE)"/>
|
|
<matches>
|
|
<phobius-match>
|
|
<signature ac="TRANSMEMBRANE" desc="Region of a membrane-bound protein predicted to be embedded in the membrane." name="Transmembrane region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>TRANSMEMBRANE</model-ac>
|
|
<locations>
|
|
<phobius-location start="17" end="34">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="17" end="34" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm." name="Cytoplasmic domain">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="69" end="92">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="69" end="92" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm." name="Cytoplasmic domain">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="1" end="16">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="1" end="16" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="TRANSMEMBRANE" desc="Region of a membrane-bound protein predicted to be embedded in the membrane." name="Transmembrane region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>TRANSMEMBRANE</model-ac>
|
|
<locations>
|
|
<phobius-location start="46" end="68">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="46" end="68" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="NON_CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region." name="Non cytoplasmic domain">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>NON_CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="35" end="45">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="35" end="45" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<tmhmm-match>
|
|
<signature ac="TMhelix" desc="Region of a membrane-bound protein predicted to be embedded in the membrane.">
|
|
<signature-library-release library="TMHMM" version="2.0c"/>
|
|
</signature>
|
|
<model-ac>TMhelix</model-ac>
|
|
<locations>
|
|
<tmhmm-location start="46" end="68">
|
|
<location-fragments>
|
|
<tmhmm-location-fragment start="46" end="68" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</tmhmm-location>
|
|
</locations>
|
|
</tmhmm-match>
|
|
<tmhmm-match>
|
|
<signature ac="TMhelix" desc="Region of a membrane-bound protein predicted to be embedded in the membrane.">
|
|
<signature-library-release library="TMHMM" version="2.0c"/>
|
|
</signature>
|
|
<model-ac>TMhelix</model-ac>
|
|
<locations>
|
|
<tmhmm-location start="12" end="31">
|
|
<location-fragments>
|
|
<tmhmm-location-fragment start="12" end="31" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</tmhmm-location>
|
|
</locations>
|
|
</tmhmm-match>
|
|
</matches>
|
|
</protein>
|
|
</orf>
|
|
<orf end="1682" start="1512" strand="SENSE">
|
|
<protein>
|
|
<sequence md5="51a744c3527b11c76d63c44f6a3e98f6">KRVRAGGGYSGHRDRRCAAGDGCGGEPGGGGTASGRQRWRTAYCGTSGGPSGAEMAD</sequence>
|
|
<xref id="Henry_10" name="Henry_10 [1512 - 1682]"/>
|
|
<matches>
|
|
<mobidblite-match>
|
|
<signature ac="mobidb-lite" desc="consensus disorder prediction" name="disorder_prediction">
|
|
<signature-library-release library="MOBIDB_LITE" version="1.5"/>
|
|
</signature>
|
|
<model-ac>mobidb-lite</model-ac>
|
|
<locations>
|
|
<mobidblite-location sequence-feature="" start="1" end="57">
|
|
<location-fragments>
|
|
<mobidblite-location-fragment start="1" end="57" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</mobidblite-location>
|
|
</locations>
|
|
</mobidblite-match>
|
|
</matches>
|
|
</protein>
|
|
</orf>
|
|
<orf end="1472" start="1167" strand="ANTISENSE">
|
|
<protein>
|
|
<sequence md5="2b17e3e958b46443671e9992f4452fab">LSSAGLMLSSSSRRRISVSFLLCALPSPFCSTSIISRTVCAGSRGLSRYSSTLRPYLSFTMFGRLLIISLIIICFTSLVSSMQSNAASSTRWLYWPFATFSI</sequence>
|
|
<xref id="Henry_19" name="Henry_19 [1472 - 1167] (REVERSE SENSE)"/>
|
|
<matches>
|
|
<phobius-match>
|
|
<signature ac="SIGNAL_PEPTIDE_N_REGION" desc="N-terminal region of a signal peptide." name="Signal peptide N-region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>SIGNAL_PEPTIDE_N_REGION</model-ac>
|
|
<locations>
|
|
<phobius-location start="1" end="15">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="1" end="15" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="SIGNAL_PEPTIDE_C_REGION" desc="C-terminal region of a signal peptide." name="Signal peptide C-region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>SIGNAL_PEPTIDE_C_REGION</model-ac>
|
|
<locations>
|
|
<phobius-location start="28" end="32">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="28" end="32" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="TRANSMEMBRANE" desc="Region of a membrane-bound protein predicted to be embedded in the membrane." name="Transmembrane region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>TRANSMEMBRANE</model-ac>
|
|
<locations>
|
|
<phobius-location start="56" end="79">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="56" end="79" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="NON_CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region." name="Non cytoplasmic domain">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>NON_CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="33" end="55">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="33" end="55" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="SIGNAL_PEPTIDE_H_REGION" desc="Hydrophobic region of a signal peptide." name="Signal peptide H-region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>SIGNAL_PEPTIDE_H_REGION</model-ac>
|
|
<locations>
|
|
<phobius-location start="16" end="27">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="16" end="27" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm." name="Cytoplasmic domain">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="80" end="102">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="80" end="102" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="SIGNAL_PEPTIDE" desc="Signal peptide region" name="Signal Peptide">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>SIGNAL_PEPTIDE</model-ac>
|
|
<locations>
|
|
<phobius-location start="1" end="32">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="1" end="32" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<tmhmm-match>
|
|
<signature ac="TMhelix" desc="Region of a membrane-bound protein predicted to be embedded in the membrane.">
|
|
<signature-library-release library="TMHMM" version="2.0c"/>
|
|
</signature>
|
|
<model-ac>TMhelix</model-ac>
|
|
<locations>
|
|
<tmhmm-location start="60" end="82">
|
|
<location-fragments>
|
|
<tmhmm-location-fragment start="60" end="82" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</tmhmm-location>
|
|
</locations>
|
|
</tmhmm-match>
|
|
</matches>
|
|
</protein>
|
|
</orf>
|
|
<orf end="910" start="713" strand="ANTISENSE">
|
|
<protein>
|
|
<sequence md5="8418313b823a6f5542e9880fb0dab871">SVPVFPAALPALYPGSDDPRFYTAERCCHTVLRSACCAVPESLYRYTHIPQSRSLPHGAAVCAHGL</sequence>
|
|
<xref id="Henry_23" name="Henry_23 [910 - 713] (REVERSE SENSE)"/>
|
|
<matches/>
|
|
</protein>
|
|
</orf>
|
|
</nucleotide-sequence>
|
|
<nucleotide-sequence>
|
|
<sequence md5="51884b55e9f025009d1b4682889bab2c">ggccgcggccugcugccguuugugcugcuggcgcugggcauugcgccgugggcgguggaaggcgcggaaaacgcgcugaaaggcggcgcgugcccgccgcgcaaaauugugcagugccugcgcuaugaaaaaccgaaaugcaccagcgauuggcagugcccggauaaaaaaaaaugcugccgcgauaccugcgcgauuaaaugccugaacccgguggcgauuaccaacccggugaaagugaaaccgggcaaaugcccggugguguauggccagugcaugaugcugaacccgccgaaccauugcaaaaccgauagccagugccugggcgaucugaaaugcugcaaaagcaugugcggcaaagugugccugaccccggugaaagcg</sequence>
|
|
<xref id="reverse" name="reverse translation of P22298"/>
|
|
<orf end="311" start="201" strand="SENSE">
|
|
<protein>
|
|
<sequence md5="9d1b85d90b88d7264fafc64ccb457882">MPEPGGDYQPGESETGQMPGGVWPVHDAEPAEPLQNR</sequence>
|
|
<xref id="reverse_4" name="reverse_4 [201 - 311] translation of P22298"/>
|
|
<matches>
|
|
<mobidblite-match>
|
|
<signature ac="mobidb-lite" desc="consensus disorder prediction" name="disorder_prediction">
|
|
<signature-library-release library="MOBIDB_LITE" version="1.5"/>
|
|
</signature>
|
|
<model-ac>mobidb-lite</model-ac>
|
|
<locations>
|
|
<mobidblite-location sequence-feature="" start="1" end="37">
|
|
<location-fragments>
|
|
<mobidblite-location-fragment start="1" end="37" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</mobidblite-location>
|
|
</locations>
|
|
</mobidblite-match>
|
|
</matches>
|
|
</protein>
|
|
</orf>
|
|
<orf end="76" start="2" strand="SENSE">
|
|
<protein>
|
|
<sequence md5="535d77e98204a4af9cf98bdf3a83d9f0">AAACCRLCCWRWALRRGRWKARKTR</sequence>
|
|
<xref id="reverse_1" name="reverse_1 [2 - 76] translation of P22298"/>
|
|
<matches/>
|
|
</protein>
|
|
</orf>
|
|
<orf end="205" start="80" strand="SENSE">
|
|
<protein>
|
|
<sequence md5="289cf7872c2605c6ae224731aa07fb50">KAARARRAKLCSACAMKNRNAPAIGSARIKKNAAAIPARLNA</sequence>
|
|
<xref id="reverse_3" name="reverse_3 [80 - 205] translation of P22298"/>
|
|
<matches>
|
|
<signalp-match>
|
|
<signature ac="SignalP-TM" name="SignalP-TM">
|
|
<signature-library-release library="SIGNALP_GRAM_POSITIVE" version="4.1"/>
|
|
</signature>
|
|
<model-ac>SignalP-TM</model-ac>
|
|
<locations>
|
|
<signalp-location score="0.477" start="1" end="11">
|
|
<location-fragments>
|
|
<signalp-location-fragment start="1" end="11" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</signalp-location>
|
|
</locations>
|
|
</signalp-match>
|
|
</matches>
|
|
</protein>
|
|
</orf>
|
|
<orf end="122" start="3" strand="ANTISENSE">
|
|
<protein>
|
|
<sequence md5="3b5965af329771e0bcc7c1d6fd4a2496">RRHCTILRGGHAPPFSAFSAPSTAHGAMPSASSTNGSRPR</sequence>
|
|
<xref id="reverse_8" name="reverse_8 [122 - 3] (REVERSE SENSE) translation of P22298"/>
|
|
<matches>
|
|
<mobidblite-match>
|
|
<signature ac="mobidb-lite" desc="consensus disorder prediction" name="disorder_prediction">
|
|
<signature-library-release library="MOBIDB_LITE" version="1.5"/>
|
|
</signature>
|
|
<model-ac>mobidb-lite</model-ac>
|
|
<locations>
|
|
<mobidblite-location sequence-feature="" start="1" end="40">
|
|
<location-fragments>
|
|
<mobidblite-location-fragment start="1" end="40" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</mobidblite-location>
|
|
</locations>
|
|
</mobidblite-match>
|
|
<mobidblite-match>
|
|
<signature ac="mobidb-lite" desc="consensus disorder prediction" name="disorder_prediction">
|
|
<signature-library-release library="MOBIDB_LITE" version="1.5"/>
|
|
</signature>
|
|
<model-ac>mobidb-lite</model-ac>
|
|
<locations>
|
|
<mobidblite-location sequence-feature="Polar" start="23" end="40">
|
|
<location-fragments>
|
|
<mobidblite-location-fragment start="23" end="40" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</mobidblite-location>
|
|
</locations>
|
|
</mobidblite-match>
|
|
<signalp-match>
|
|
<signature ac="SignalP-TM" name="SignalP-TM">
|
|
<signature-library-release library="SIGNALP_GRAM_POSITIVE" version="4.1"/>
|
|
</signature>
|
|
<model-ac>SignalP-TM</model-ac>
|
|
<locations>
|
|
<signalp-location score="0.511" start="1" end="26">
|
|
<location-fragments>
|
|
<signalp-location-fragment start="1" end="26" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</signalp-location>
|
|
</locations>
|
|
</signalp-match>
|
|
</matches>
|
|
</protein>
|
|
</orf>
|
|
<orf end="384" start="1" strand="SENSE">
|
|
<protein>
|
|
<sequence md5="d1b6cbf29dde9e5220196f3f6114a1c3">GRGLLPFVLLALGIAPWAVEGAENALKGGACPPRKIVQCLRYEKPKCTSDWQCPDKKKCCRDTCAIKCLNPVAITNPVKVKPGKCPVVYGQCMMLNPPNHCKTDSQCLGDLKCCKSMCGKVCLTPVKA</sequence>
|
|
<xref id="reverse_5" name="reverse_5 [1 - 384] translation of P22298"/>
|
|
<matches>
|
|
<fingerprints-match evalue="1.4E-7" graphscan="IIII">
|
|
<signature ac="PR00003" desc="4-disulphide core signature" name="4DISULPHCORE">
|
|
<entry ac="IPR008197" desc="WAP-type 'four-disulfide core' domain" name="WAP_dom" type="DOMAIN">
|
|
<go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0030414" name="peptidase inhibitor activity"/>
|
|
<go-xref category="CELLULAR_COMPONENT" db="GO" id="GO:0005576" name="extracellular region"/>
|
|
</entry>
|
|
<signature-library-release library="PRINTS" version="42.0"/>
|
|
</signature>
|
|
<model-ac>PR00003</model-ac>
|
|
<locations>
|
|
<fingerprints-location motifNumber="3" pvalue="2.08E-4" score="52.92" start="107" end="116">
|
|
<location-fragments>
|
|
<fingerprints-location-fragment start="107" end="116" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</fingerprints-location>
|
|
<fingerprints-location motifNumber="1" pvalue="2.31E-4" score="49.17" start="78" end="87">
|
|
<location-fragments>
|
|
<fingerprints-location-fragment start="78" end="87" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</fingerprints-location>
|
|
<fingerprints-location motifNumber="2" pvalue="0.00295" score="47.92" start="100" end="107">
|
|
<location-fragments>
|
|
<fingerprints-location-fragment start="100" end="107" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</fingerprints-location>
|
|
<fingerprints-location motifNumber="4" pvalue="4.35E-4" score="50.0" start="117" end="125">
|
|
<location-fragments>
|
|
<fingerprints-location-fragment start="117" end="125" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</fingerprints-location>
|
|
</locations>
|
|
</fingerprints-match>
|
|
<hmmer3-match evalue="1.2E-19" score="70.3">
|
|
<signature ac="PF00095" desc="WAP-type (Whey Acidic Protein) 'four-disulfide core'" name="WAP">
|
|
<entry ac="IPR008197" desc="WAP-type 'four-disulfide core' domain" name="WAP_dom" type="DOMAIN">
|
|
<go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0030414" name="peptidase inhibitor activity"/>
|
|
<go-xref category="CELLULAR_COMPONENT" db="GO" id="GO:0005576" name="extracellular region"/>
|
|
</entry>
|
|
<signature-library-release library="PFAM" version="31.0"/>
|
|
</signature>
|
|
<model-ac>PF00095</model-ac>
|
|
<locations>
|
|
<hmmer3-location env-end="71" env-start="27" post-processed="true" score="36.1" evalue="6.0E-9" hmm-start="1" hmm-end="40" hmm-length="40" hmm-bounds="COMPLETE" start="27" end="71">
|
|
<location-fragments>
|
|
<hmmer3-location-fragment start="27" end="71" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</hmmer3-location>
|
|
<hmmer3-location env-end="125" env-start="81" post-processed="true" score="40.6" evalue="2.4E-10" hmm-start="1" hmm-end="40" hmm-length="40" hmm-bounds="COMPLETE" start="81" end="125">
|
|
<location-fragments>
|
|
<hmmer3-location-fragment start="81" end="125" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</hmmer3-location>
|
|
</locations>
|
|
</hmmer3-match>
|
|
<hmmer3-match evalue="2.0E-28" score="100.1">
|
|
<signature ac="G3DSA:4.10.75.10">
|
|
<entry ac="IPR036645" desc="Elafin-like superfamily" name="Elafin-like_sf" type="HOMOLOGOUS_SUPERFAMILY"/>
|
|
<signature-library-release library="GENE3D" version="4.2.0"/>
|
|
</signature>
|
|
<model-ac>2z7fI00</model-ac>
|
|
<locations>
|
|
<hmmer3-location env-end="73" env-start="26" post-processed="true" score="41.3" evalue="4.4E-10" hmm-start="3" hmm-end="48" hmm-length="50" hmm-bounds="COMPLETE" start="26" end="73">
|
|
<location-fragments>
|
|
<hmmer3-location-fragment start="26" end="73" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</hmmer3-location>
|
|
<hmmer3-location env-end="128" env-start="79" post-processed="true" score="65.0" evalue="1.8E-17" hmm-start="3" hmm-end="49" hmm-length="50" hmm-bounds="COMPLETE" start="79" end="128">
|
|
<location-fragments>
|
|
<hmmer3-location-fragment start="79" end="128" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</hmmer3-location>
|
|
</locations>
|
|
</hmmer3-match>
|
|
<phobius-match>
|
|
<signature ac="NON_CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region." name="Non cytoplasmic domain">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>NON_CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="22" end="128">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="22" end="128" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="SIGNAL_PEPTIDE_C_REGION" desc="C-terminal region of a signal peptide." name="Signal peptide C-region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>SIGNAL_PEPTIDE_C_REGION</model-ac>
|
|
<locations>
|
|
<phobius-location start="16" end="21">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="16" end="21" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="SIGNAL_PEPTIDE_H_REGION" desc="Hydrophobic region of a signal peptide." name="Signal peptide H-region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>SIGNAL_PEPTIDE_H_REGION</model-ac>
|
|
<locations>
|
|
<phobius-location start="4" end="15">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="4" end="15" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="SIGNAL_PEPTIDE_N_REGION" desc="N-terminal region of a signal peptide." name="Signal peptide N-region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>SIGNAL_PEPTIDE_N_REGION</model-ac>
|
|
<locations>
|
|
<phobius-location start="1" end="3">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="1" end="3" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="SIGNAL_PEPTIDE" desc="Signal peptide region" name="Signal Peptide">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>SIGNAL_PEPTIDE</model-ac>
|
|
<locations>
|
|
<phobius-location start="1" end="21">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="1" end="21" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<profilescan-match>
|
|
<signature ac="PS51390" desc="WAP-type 'four-disulfide core' domain profile." name="WAP">
|
|
<entry ac="IPR008197" desc="WAP-type 'four-disulfide core' domain" name="WAP_dom" type="DOMAIN">
|
|
<go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0030414" name="peptidase inhibitor activity"/>
|
|
<go-xref category="CELLULAR_COMPONENT" db="GO" id="GO:0005576" name="extracellular region"/>
|
|
</entry>
|
|
<signature-library-release library="PROSITE_PROFILES" version="2018_02"/>
|
|
</signature>
|
|
<model-ac>PS51390</model-ac>
|
|
<locations>
|
|
<profilescan-location score="13.453" start="24" end="72">
|
|
<location-fragments>
|
|
<profilescan-location-fragment start="24" end="72" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
<alignment>NALKGGACPPRKIV--QCLryeKPKCTSDWQCPDKKKCCRDTCAIKCLNPV</alignment>
|
|
</profilescan-location>
|
|
</locations>
|
|
</profilescan-match>
|
|
<profilescan-match>
|
|
<signature ac="PS51390" desc="WAP-type 'four-disulfide core' domain profile." name="WAP">
|
|
<entry ac="IPR008197" desc="WAP-type 'four-disulfide core' domain" name="WAP_dom" type="DOMAIN">
|
|
<go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0030414" name="peptidase inhibitor activity"/>
|
|
<go-xref category="CELLULAR_COMPONENT" db="GO" id="GO:0005576" name="extracellular region"/>
|
|
</entry>
|
|
<signature-library-release library="PROSITE_PROFILES" version="2018_02"/>
|
|
</signature>
|
|
<model-ac>PS51390</model-ac>
|
|
<locations>
|
|
<profilescan-location score="14.545" start="78" end="126">
|
|
<location-fragments>
|
|
<profilescan-location-fragment start="78" end="126" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
<alignment>VKVKPGKCPVV-YG--QCMmlnpPNHCKTDSQCLGDLKCCKSMCGKVCLTPV</alignment>
|
|
</profilescan-location>
|
|
</locations>
|
|
</profilescan-match>
|
|
<signalp-match>
|
|
<signature ac="SignalP-noTM" name="SignalP-noTM">
|
|
<signature-library-release library="SIGNALP_EUK" version="4.1"/>
|
|
</signature>
|
|
<model-ac>SignalP-noTM</model-ac>
|
|
<locations>
|
|
<signalp-location score="0.876" start="1" end="21">
|
|
<location-fragments>
|
|
<signalp-location-fragment start="1" end="21" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</signalp-location>
|
|
</locations>
|
|
</signalp-match>
|
|
</matches>
|
|
</protein>
|
|
</orf>
|
|
<orf end="382" start="224" strand="ANTISENSE">
|
|
<protein>
|
|
<sequence md5="757042512ef54f1d6adc88727764af28">LSPGSGTLCRTCFCSISDRPGTGYRFCNGSAGSASCTGHTPPGICPVSLSPGW</sequence>
|
|
<xref id="reverse_6" name="reverse_6 [382 - 224] (REVERSE SENSE) translation of P22298"/>
|
|
<matches/>
|
|
</protein>
|
|
</orf>
|
|
<orf end="196" start="2" strand="ANTISENSE">
|
|
<protein>
|
|
<sequence md5="33c8904b1ce03a5caf7f07b643b7182e">SRRYRGSIFFYPGTANRWCISVFHSAGTAQFCAAGTRRLSARFPRLPPPTAQCPAPAAQTAAGRG</sequence>
|
|
<xref id="reverse_9" name="reverse_9 [196 - 2] (REVERSE SENSE) translation of P22298"/>
|
|
<matches/>
|
|
</protein>
|
|
</orf>
|
|
<orf end="125" start="3" strand="SENSE">
|
|
<protein>
|
|
<sequence md5="03012b80d5da2d4c467b9e4111736cb9">PRPAAVCAAGAGHCAVGGGRRGKRAERRRVPAAQNCAVPAL</sequence>
|
|
<xref id="reverse_2" name="reverse_2 [3 - 125] translation of P22298"/>
|
|
<matches>
|
|
<mobidblite-match>
|
|
<signature ac="mobidb-lite" desc="consensus disorder prediction" name="disorder_prediction">
|
|
<signature-library-release library="MOBIDB_LITE" version="1.5"/>
|
|
</signature>
|
|
<model-ac>mobidb-lite</model-ac>
|
|
<locations>
|
|
<mobidblite-location sequence-feature="" start="14" end="41">
|
|
<location-fragments>
|
|
<mobidblite-location-fragment start="14" end="41" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</mobidblite-location>
|
|
</locations>
|
|
</mobidblite-match>
|
|
</matches>
|
|
</protein>
|
|
</orf>
|
|
<orf end="383" start="126" strand="ANTISENSE">
|
|
<protein>
|
|
<sequence md5="3fc751b463e324b7910bbb34f23373b7">AFTGVRHTLPHMLLQHFRSPRHWLSVLQWFGGFSIMHWPYTTGHLPGFTFTGLVIATGFRHLIAQVSRQHFFLSGHCQSLVHFGFS</sequence>
|
|
<xref id="reverse_7" name="reverse_7 [383 - 126] (REVERSE SENSE) translation of P22298"/>
|
|
<matches>
|
|
<phobius-match>
|
|
<signature ac="CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm." name="Cytoplasmic domain">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="1" end="20">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="1" end="20" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="NON_CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region." name="Non cytoplasmic domain">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>NON_CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="40" end="44">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="40" end="44" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm." name="Cytoplasmic domain">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="64" end="86">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="64" end="86" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="TRANSMEMBRANE" desc="Region of a membrane-bound protein predicted to be embedded in the membrane." name="Transmembrane region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>TRANSMEMBRANE</model-ac>
|
|
<locations>
|
|
<phobius-location start="45" end="63">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="45" end="63" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="TRANSMEMBRANE" desc="Region of a membrane-bound protein predicted to be embedded in the membrane." name="Transmembrane region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>TRANSMEMBRANE</model-ac>
|
|
<locations>
|
|
<phobius-location start="21" end="39">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="21" end="39" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<tmhmm-match>
|
|
<signature ac="TMhelix" desc="Region of a membrane-bound protein predicted to be embedded in the membrane.">
|
|
<signature-library-release library="TMHMM" version="2.0c"/>
|
|
</signature>
|
|
<model-ac>TMhelix</model-ac>
|
|
<locations>
|
|
<tmhmm-location start="42" end="64">
|
|
<location-fragments>
|
|
<tmhmm-location-fragment start="42" end="64" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</tmhmm-location>
|
|
</locations>
|
|
</tmhmm-match>
|
|
</matches>
|
|
</protein>
|
|
</orf>
|
|
<orf end="384" start="1" strand="ANTISENSE">
|
|
<protein>
|
|
<sequence md5="0aed180405bafcb32e693c5433782622">RFHRGQAHFAAHAFAAFQIAQALAIGFAMVRRVQHHALAIHHRAFARFHFHRVGNRHRVQAFNRAGIAAAFFFIRALPIAGAFRFFIAQALHNFARRARAAFQRVFRAFHRPRRNAQRQQHKRQQAAA</sequence>
|
|
<xref id="reverse_10" name="reverse_10 [384 - 1] (REVERSE SENSE) translation of P22298"/>
|
|
<matches>
|
|
<phobius-match>
|
|
<signature ac="SIGNAL_PEPTIDE_H_REGION" desc="Hydrophobic region of a signal peptide." name="Signal peptide H-region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>SIGNAL_PEPTIDE_H_REGION</model-ac>
|
|
<locations>
|
|
<phobius-location start="7" end="17">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="7" end="17" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="NON_CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region." name="Non cytoplasmic domain">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>NON_CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="25" end="64">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="25" end="64" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="SIGNAL_PEPTIDE" desc="Signal peptide region" name="Signal Peptide">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>SIGNAL_PEPTIDE</model-ac>
|
|
<locations>
|
|
<phobius-location start="1" end="24">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="1" end="24" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="SIGNAL_PEPTIDE_N_REGION" desc="N-terminal region of a signal peptide." name="Signal peptide N-region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>SIGNAL_PEPTIDE_N_REGION</model-ac>
|
|
<locations>
|
|
<phobius-location start="1" end="6">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="1" end="6" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="SIGNAL_PEPTIDE_C_REGION" desc="C-terminal region of a signal peptide." name="Signal peptide C-region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>SIGNAL_PEPTIDE_C_REGION</model-ac>
|
|
<locations>
|
|
<phobius-location start="18" end="24">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="18" end="24" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm." name="Cytoplasmic domain">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="88" end="128">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="88" end="128" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="TRANSMEMBRANE" desc="Region of a membrane-bound protein predicted to be embedded in the membrane." name="Transmembrane region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>TRANSMEMBRANE</model-ac>
|
|
<locations>
|
|
<phobius-location start="65" end="87">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="65" end="87" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<tmhmm-match>
|
|
<signature ac="TMhelix" desc="Region of a membrane-bound protein predicted to be embedded in the membrane.">
|
|
<signature-library-release library="TMHMM" version="2.0c"/>
|
|
</signature>
|
|
<model-ac>TMhelix</model-ac>
|
|
<locations>
|
|
<tmhmm-location start="7" end="29">
|
|
<location-fragments>
|
|
<tmhmm-location-fragment start="7" end="29" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</tmhmm-location>
|
|
</locations>
|
|
</tmhmm-match>
|
|
<tmhmm-match>
|
|
<signature ac="TMhelix" desc="Region of a membrane-bound protein predicted to be embedded in the membrane.">
|
|
<signature-library-release library="TMHMM" version="2.0c"/>
|
|
</signature>
|
|
<model-ac>TMhelix</model-ac>
|
|
<locations>
|
|
<tmhmm-location start="65" end="87">
|
|
<location-fragments>
|
|
<tmhmm-location-fragment start="65" end="87" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</tmhmm-location>
|
|
</locations>
|
|
</tmhmm-match>
|
|
</matches>
|
|
</protein>
|
|
</orf>
|
|
</nucleotide-sequence>
|
|
<nucleotide-sequence>
|
|
<sequence md5="e9b174d63adc63bab79c90fdbc8d1670">atggcggcggaagaaggcgtggtgattgcgtgccataacaaagatgaatttgatgcgcagatgaccaaagcgaaagaagcgggcaaagtggtgattattgattttaccgcgagctggtgcggcccgtgccgctttattgcgccggtgtttgcggaatatgcgaaaaaatttccgggcgcggtgtttctgaaagtggatgtggatgaactgaaagaagtggcggaaaaatataacgtggaagcgatgccgacctttctgtttattaaagatggcgcggaagcggataaagtggtgggcgcgcgcaaagatgatctgcagaacaccattgtgaaacatgtgggcgcgaccgcggcgagcgcgagcgcg</sequence>
|
|
<xref id="Wilf" name="Wilf"/>
|
|
<orf end="203" start="102" strand="SENSE">
|
|
<protein>
|
|
<sequence md5="7a8129be5d5d592c79a4905d5afd897c">FYRELVRPVPLYCAGVCGICEKISGRGVSESGCG</sequence>
|
|
<xref id="Wilf_2" name="Wilf_2 [102 - 203]"/>
|
|
<matches/>
|
|
</protein>
|
|
</orf>
|
|
<orf end="187" start="95" strand="SENSE">
|
|
<protein>
|
|
<sequence md5="760e9c23b012c2108d532c10ece55d57">LLILPRAGAARAALLRRCLRNMRKNFRARCF</sequence>
|
|
<xref id="Wilf_1" name="Wilf_1 [95 - 187]"/>
|
|
<matches/>
|
|
</protein>
|
|
</orf>
|
|
<orf end="365" start="3" strand="ANTISENSE">
|
|
<protein>
|
|
<sequence md5="5d776c87c0347506ee7cd79883240766">ALALAAVAPTCFTMVFCRSSLRAPTTLSASAPSLINRKVGIASTLYFSATSFSSSTSTFRNTAPGNFFAYSANTGAIKRHGPHQLAVKSIITTLPASFALVICASNSSLLWHAITTPSSAA</sequence>
|
|
<xref id="Wilf_7" name="Wilf_7 [365 - 3] (REVERSE SENSE)"/>
|
|
<matches>
|
|
<phobius-match>
|
|
<signature ac="NON_CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region." name="Non cytoplasmic domain">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>NON_CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="23" end="121">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="23" end="121" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="SIGNAL_PEPTIDE_C_REGION" desc="C-terminal region of a signal peptide." name="Signal peptide C-region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>SIGNAL_PEPTIDE_C_REGION</model-ac>
|
|
<locations>
|
|
<phobius-location start="18" end="22">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="18" end="22" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="SIGNAL_PEPTIDE_N_REGION" desc="N-terminal region of a signal peptide." name="Signal peptide N-region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>SIGNAL_PEPTIDE_N_REGION</model-ac>
|
|
<locations>
|
|
<phobius-location start="1" end="1">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="1" end="1" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="SIGNAL_PEPTIDE_H_REGION" desc="Hydrophobic region of a signal peptide." name="Signal peptide H-region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>SIGNAL_PEPTIDE_H_REGION</model-ac>
|
|
<locations>
|
|
<phobius-location start="2" end="17">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="2" end="17" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="SIGNAL_PEPTIDE" desc="Signal peptide region" name="Signal Peptide">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>SIGNAL_PEPTIDE</model-ac>
|
|
<locations>
|
|
<phobius-location start="1" end="22">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="1" end="22" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<signalp-match>
|
|
<signature ac="SignalP-TM" name="SignalP-TM">
|
|
<signature-library-release library="SIGNALP_GRAM_POSITIVE" version="4.1"/>
|
|
</signature>
|
|
<model-ac>SignalP-TM</model-ac>
|
|
<locations>
|
|
<signalp-location score="0.551" start="1" end="29">
|
|
<location-fragments>
|
|
<signalp-location-fragment start="1" end="29" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</signalp-location>
|
|
</locations>
|
|
</signalp-match>
|
|
</matches>
|
|
</protein>
|
|
</orf>
|
|
<orf end="328" start="212" strand="SENSE">
|
|
<protein>
|
|
<sequence md5="f7028b00c55c47f91f861f038b7b9626">KKWRKNITWKRCRPFCLLKMARKRIKWWARAKMICRTPL</sequence>
|
|
<xref id="Wilf_3" name="Wilf_3 [212 - 328]"/>
|
|
<matches/>
|
|
</protein>
|
|
</orf>
|
|
<orf end="366" start="1" strand="ANTISENSE">
|
|
<protein>
|
|
<sequence md5="b10c91dbf15c9a8ba8dc330a2d74bf46">RARARRGRAHMFHNGVLQIIFARAHHFIRFRAIFNKQKGRHRFHVIFFRHFFQFIHIHFQKHRARKFFRIFRKHRRNKAARAAPARGKINNHHFARFFRFGHLRIKFIFVMARNHHAFFRRH</sequence>
|
|
<xref id="Wilf_9" name="Wilf_9 [366 - 1] (REVERSE SENSE)"/>
|
|
<matches/>
|
|
</protein>
|
|
</orf>
|
|
<orf end="259" start="137" strand="ANTISENSE">
|
|
<protein>
|
|
<sequence md5="29c73650b0b84716b2963b152f59ca9c">TERSASLPRYIFPPLLSVHPHPLSETPRPEIFSHIPQTPAQ</sequence>
|
|
<xref id="Wilf_6" name="Wilf_6 [259 - 137] (REVERSE SENSE)"/>
|
|
<matches>
|
|
<mobidblite-match>
|
|
<signature ac="mobidb-lite" desc="consensus disorder prediction" name="disorder_prediction">
|
|
<signature-library-release library="MOBIDB_LITE" version="1.5"/>
|
|
</signature>
|
|
<model-ac>mobidb-lite</model-ac>
|
|
<locations>
|
|
<mobidblite-location sequence-feature="" start="18" end="41">
|
|
<location-fragments>
|
|
<mobidblite-location-fragment start="18" end="41" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</mobidblite-location>
|
|
</locations>
|
|
</mobidblite-match>
|
|
</matches>
|
|
</protein>
|
|
</orf>
|
|
<orf end="366" start="1" strand="SENSE">
|
|
<protein>
|
|
<sequence md5="f927b0d241297dcc9a1c5990b58bf3c4">MAAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAASASA</sequence>
|
|
<xref id="Wilf_4" name="Wilf_4 [1 - 366]"/>
|
|
<matches>
|
|
<fingerprints-match evalue="2.5E-7" graphscan="III">
|
|
<signature ac="PR00421" desc="Thioredoxin family signature" name="THIOREDOXIN">
|
|
<signature-library-release library="PRINTS" version="42.0"/>
|
|
</signature>
|
|
<model-ac>PR00421</model-ac>
|
|
<locations>
|
|
<fingerprints-location motifNumber="1" pvalue="0.0" score="48.89" start="31" end="39">
|
|
<location-fragments>
|
|
<fingerprints-location-fragment start="31" end="39" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</fingerprints-location>
|
|
<fingerprints-location motifNumber="2" pvalue="0.0" score="37.87" start="78" end="89">
|
|
<location-fragments>
|
|
<fingerprints-location-fragment start="78" end="89" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</fingerprints-location>
|
|
<fingerprints-location motifNumber="3" pvalue="0.0" score="65.28" start="39" end="48">
|
|
<location-fragments>
|
|
<fingerprints-location-fragment start="39" end="48" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</fingerprints-location>
|
|
</locations>
|
|
</fingerprints-match>
|
|
<hmmer3-match evalue="3.3E-39" score="135.5">
|
|
<signature ac="G3DSA:3.40.30.10">
|
|
<signature-library-release library="GENE3D" version="4.2.0"/>
|
|
</signature>
|
|
<model-ac>3d22A00</model-ac>
|
|
<locations>
|
|
<hmmer3-location env-end="119" env-start="1" post-processed="true" score="135.4" evalue="3.8E-39" hmm-start="22" hmm-end="130" hmm-length="139" hmm-bounds="COMPLETE" start="1" end="119">
|
|
<location-fragments/>
|
|
</hmmer3-location>
|
|
</locations>
|
|
</hmmer3-match>
|
|
<hmmer3-match evalue="4.9E-31" score="106.7">
|
|
<signature ac="PF00085" desc="Thioredoxin" name="Thioredoxin">
|
|
<entry ac="IPR013766" desc="Thioredoxin domain" name="Thioredoxin_domain" type="DOMAIN">
|
|
<go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0045454" name="cell redox homeostasis"/>
|
|
</entry>
|
|
<signature-library-release library="PFAM" version="31.0"/>
|
|
</signature>
|
|
<model-ac>PF00085</model-ac>
|
|
<locations>
|
|
<hmmer3-location env-end="112" env-start="8" post-processed="true" score="106.4" evalue="5.7E-31" hmm-start="2" hmm-end="104" hmm-length="104" hmm-bounds="C_TERMINAL_COMPLETE" start="9" end="112">
|
|
<location-fragments/>
|
|
</hmmer3-location>
|
|
</locations>
|
|
</hmmer3-match>
|
|
<hmmer3-match evalue="5.9E-29" score="99.1">
|
|
<signature ac="PIRSF000077" name="Thioredoxin">
|
|
<entry ac="IPR005746" desc="Thioredoxin" name="Thioredoxin" type="FAMILY">
|
|
<go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0015035" name="protein disulfide oxidoreductase activity"/>
|
|
<go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0006662" name="glycerol ether metabolic process"/>
|
|
<go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0045454" name="cell redox homeostasis"/>
|
|
</entry>
|
|
<signature-library-release library="PIRSF" version="3.02"/>
|
|
</signature>
|
|
<model-ac>PIRSF000077</model-ac>
|
|
<locations>
|
|
<hmmer3-location env-end="113" env-start="7" post-processed="false" score="98.8" evalue="7.4E-29" hmm-start="14" hmm-end="111" hmm-length="107" hmm-bounds="COMPLETE" start="7" end="113">
|
|
<location-fragments/>
|
|
</hmmer3-location>
|
|
</locations>
|
|
</hmmer3-match>
|
|
<panther-match evalue="1.7E-51" familyName="Not available" score="175.4">
|
|
<signature ac="PTHR10438" name="THIOREDOXIN">
|
|
<entry ac="IPR005746" desc="Thioredoxin" name="Thioredoxin" type="FAMILY">
|
|
<go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0015035" name="protein disulfide oxidoreductase activity"/>
|
|
<go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0006662" name="glycerol ether metabolic process"/>
|
|
<go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0045454" name="cell redox homeostasis"/>
|
|
</entry>
|
|
<signature-library-release library="PANTHER" version="12.0"/>
|
|
</signature>
|
|
<model-ac>PTHR10438</model-ac>
|
|
<locations>
|
|
<panther-location env-start="1" env-end="118" hmm-start="2" hmm-end="113" hmm-length="117" hmm-bounds="COMPLETE" start="3" end="114">
|
|
<location-fragments>
|
|
<panther-location-fragment start="3" end="114" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</panther-location>
|
|
</locations>
|
|
</panther-match>
|
|
<panther-match evalue="1.7E-51" familyName="Not available" score="175.4">
|
|
<signature ac="PTHR10438:SF293" name="SUBFAMILY NOT NAMED">
|
|
<signature-library-release library="PANTHER" version="12.0"/>
|
|
</signature>
|
|
<model-ac>PTHR10438:SF293</model-ac>
|
|
<locations>
|
|
<panther-location env-start="1" env-end="118" hmm-start="2" hmm-end="113" hmm-length="117" hmm-bounds="COMPLETE" start="3" end="114">
|
|
<location-fragments>
|
|
<panther-location-fragment start="3" end="114" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</panther-location>
|
|
</locations>
|
|
</panther-match>
|
|
<patternscan-match>
|
|
<signature ac="PS00194" desc="Thioredoxin family active site." name="THIOREDOXIN_1">
|
|
<entry ac="IPR017937" desc="Thioredoxin, conserved site" name="Thioredoxin_CS" type="CONSERVED_SITE">
|
|
<go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0045454" name="cell redox homeostasis"/>
|
|
</entry>
|
|
<signature-library-release library="PROSITE_PATTERNS" version="2018_02"/>
|
|
</signature>
|
|
<model-ac>PS00194</model-ac>
|
|
<locations>
|
|
<patternscan-location level="NONE" start="32" end="50">
|
|
<location-fragments>
|
|
<patternscan-location-fragment start="32" end="50" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
<alignment>Not available</alignment>
|
|
</patternscan-location>
|
|
</locations>
|
|
</patternscan-match>
|
|
<profilescan-match>
|
|
<signature ac="PS51352" desc="Thioredoxin domain profile." name="THIOREDOXIN_2">
|
|
<entry ac="IPR013766" desc="Thioredoxin domain" name="Thioredoxin_domain" type="DOMAIN">
|
|
<go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0045454" name="cell redox homeostasis"/>
|
|
</entry>
|
|
<signature-library-release library="PROSITE_PROFILES" version="2018_02"/>
|
|
</signature>
|
|
<model-ac>PS51352</model-ac>
|
|
<locations>
|
|
<profilescan-location score="14.057" start="1" end="118">
|
|
<location-fragments>
|
|
<profilescan-location-fragment start="1" end="118" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
<alignment>Not available</alignment>
|
|
</profilescan-location>
|
|
</locations>
|
|
</profilescan-match>
|
|
<superfamilyhmmer3-match evalue="6.53E-36">
|
|
<signature ac="SSF52833" name="Thioredoxin-like">
|
|
<entry ac="IPR036249" desc="Thioredoxin-like superfamily" name="Thioredoxin-like_sf" type="HOMOLOGOUS_SUPERFAMILY"/>
|
|
<signature-library-release library="SUPERFAMILY" version="1.75"/>
|
|
</signature>
|
|
<model-ac>0053311</model-ac>
|
|
<locations>
|
|
<superfamilyhmmer3-location hmm-length="217" start="6" end="114">
|
|
<location-fragments/>
|
|
</superfamilyhmmer3-location>
|
|
</locations>
|
|
</superfamilyhmmer3-match>
|
|
</matches>
|
|
</protein>
|
|
</orf>
|
|
<orf end="364" start="266" strand="ANTISENSE">
|
|
<protein>
|
|
<sequence md5="b2242d49706cbcb174bff106b353725f">RSRSPRSRPHVSQWCSADHLCARPPLYPLPRHL</sequence>
|
|
<xref id="Wilf_5" name="Wilf_5 [364 - 266] (REVERSE SENSE)"/>
|
|
<matches/>
|
|
</protein>
|
|
</orf>
|
|
<orf end="94" start="2" strand="ANTISENSE">
|
|
<protein>
|
|
<sequence md5="94eff4378f40a32d3a2438696f4bfc30">SPLCPLLSLWSSAHQIHLCYGTQSPRLLPPP</sequence>
|
|
<xref id="Wilf_8" name="Wilf_8 [94 - 2] (REVERSE SENSE)"/>
|
|
<matches>
|
|
<phobius-match>
|
|
<signature ac="SIGNAL_PEPTIDE_N_REGION" desc="N-terminal region of a signal peptide." name="Signal peptide N-region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>SIGNAL_PEPTIDE_N_REGION</model-ac>
|
|
<locations>
|
|
<phobius-location start="1" end="2">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="1" end="2" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="NON_CYTOPLASMIC_DOMAIN" desc="Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region." name="Non cytoplasmic domain">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>NON_CYTOPLASMIC_DOMAIN</model-ac>
|
|
<locations>
|
|
<phobius-location start="22" end="31">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="22" end="31" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="SIGNAL_PEPTIDE_C_REGION" desc="C-terminal region of a signal peptide." name="Signal peptide C-region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>SIGNAL_PEPTIDE_C_REGION</model-ac>
|
|
<locations>
|
|
<phobius-location start="14" end="21">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="14" end="21" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="SIGNAL_PEPTIDE_H_REGION" desc="Hydrophobic region of a signal peptide." name="Signal peptide H-region">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>SIGNAL_PEPTIDE_H_REGION</model-ac>
|
|
<locations>
|
|
<phobius-location start="3" end="13">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="3" end="13" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
<phobius-match>
|
|
<signature ac="SIGNAL_PEPTIDE" desc="Signal peptide region" name="Signal Peptide">
|
|
<signature-library-release library="PHOBIUS" version="1.01"/>
|
|
</signature>
|
|
<model-ac>SIGNAL_PEPTIDE</model-ac>
|
|
<locations>
|
|
<phobius-location start="1" end="21">
|
|
<location-fragments>
|
|
<phobius-location-fragment start="1" end="21" dc-status="CONTINUOUS"/>
|
|
</location-fragments>
|
|
</phobius-location>
|
|
</locations>
|
|
</phobius-match>
|
|
</matches>
|
|
</protein>
|
|
</orf>
|
|
</nucleotide-sequence>
|
|
</nucleotide-sequence-matches> |