59 lines
780 B
Promela
59 lines
780 B
Promela
load 1FFK.pdb,1ffk
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# create object with only nucleic acid
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create nuc = (1ffk and not n;ca,cd)
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del 1ffk
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# color contiguous chains
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edit (c;0 & n;P & i;713)
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color blue,(pkchain)
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edit (c;0 & n;P & i;2250)
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color green,(pkchain)
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edit (c;0 & n;P & i;1876)
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color magenta,(pkchain)
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edit (c;0 & n;P & i;2596)
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color violet,(pkchain)
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edit (c;0 & n;P & i;1993)
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color cyan,(pkchain)
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edit (c;0 & n;P & i;2764)
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color white,(pkchain)
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edit (c;0 & n;P & i;1552)
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color salmon,(pkchain)
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edit (c;0 & n;P & i;857)
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color pink,(pkchain)
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edit (c;0 & n;P & i;1149)
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color orange,(pkchain)
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edit (c;9 & n;P & i;21)
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color yellow,(pkchain)
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# orient the "hand"
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reset
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turn y,-60
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turn z,180
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move y,-15
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# show spheres
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show spheres
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# ray trace
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set antialias=1
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ray
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# write output
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png ribosome.png
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