468 lines
14 KiB
Plaintext
468 lines
14 KiB
Plaintext
AUTHORS
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LICENSE
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README
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README.md
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pyproject.toml
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setup.py
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contrib/champ/champ.c
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contrib/champ/champ_module.c
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contrib/champ/chiral.c
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contrib/champ/err2.c
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contrib/champ/feedback2.c
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contrib/champ/list.c
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contrib/champ/os_memory.c
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contrib/champ/sort.c
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contrib/champ/strblock.c
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contrib/champ/vla.c
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contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c
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contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c
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contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp
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contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c
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contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp
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contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c
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contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp
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contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp
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contrib/uiuc/plugins/molfile_plugin/src/carplugin.c
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contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp
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contrib/uiuc/plugins/molfile_plugin/src/corplugin.c
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contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c
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contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp
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contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c
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contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c
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contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp
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contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp
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contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp
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contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp
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contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp
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contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c
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contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp
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contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp
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contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp
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contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp
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contrib/uiuc/plugins/molfile_plugin/src/hash.c
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contrib/uiuc/plugins/molfile_plugin/src/inthash.c
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contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c
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contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp
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contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp
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contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp
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contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp
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contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c
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contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp
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contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp
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contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c
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contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c
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contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp
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contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp
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contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp
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contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp
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contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c
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contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp
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contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp
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contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp
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contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp
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contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c
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contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c
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contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp
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contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c
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contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp
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contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp
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contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp
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contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c
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contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp
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contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c
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contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c
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contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c
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contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c
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contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c
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contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c
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contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c
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contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c
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contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp
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contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp
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contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp
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contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c
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layer0/Bezier.cpp
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layer0/Block.cpp
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layer0/CarveHelper.cpp
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layer0/ContourSurf.cpp
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layer0/Crystal.cpp
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layer0/Err.cpp
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layer0/Feedback.cpp
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layer0/Field.cpp
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layer0/File.cpp
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layer0/GFXManager.cpp
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layer0/GenericBuffer.cpp
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layer0/GraphicsUtil.cpp
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layer0/Isosurf.cpp
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layer0/Map.cpp
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layer0/Match.cpp
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layer0/Matrix.cpp
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layer0/MemoryDebug.cpp
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layer0/MemoryUsage.cpp
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layer0/MyPNG.cpp
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layer0/Parse.cpp
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layer0/Pixmap.cpp
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layer0/PostProcess.cpp
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layer0/PrintUtils.cpp
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layer0/ShaderMgr.cpp
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layer0/ShaderPreprocessor.cpp
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layer0/ShaderPrg.cpp
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layer0/Sphere.cpp
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layer0/TTT.cpp
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layer0/Tetsurf.cpp
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layer0/Texture.cpp
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layer0/Tracker.cpp
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layer0/Triangle.cpp
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layer0/Util.cpp
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layer0/Util2.cpp
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layer0/Vector.cpp
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layer0/Word.cpp
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layer0/ccealignmodule.cpp
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layer0/marching_cubes.cpp
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layer0/os_gl.cpp
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layer1/Basis.cpp
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layer1/ButMode.cpp
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layer1/CGO.cpp
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layer1/CGOGL.cpp
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layer1/CGORenderer.cpp
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layer1/COLLADA.cpp
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layer1/Camera.cpp
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layer1/Character.cpp
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layer1/Color.cpp
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layer1/Control.cpp
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layer1/Extrude.cpp
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layer1/Font.cpp
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layer1/FontGLUT.cpp
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layer1/FontGLUT8x13.cpp
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layer1/FontGLUT9x15.cpp
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layer1/FontGLUTHel10.cpp
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layer1/FontGLUTHel12.cpp
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layer1/FontGLUTHel18.cpp
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layer1/FontType.cpp
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layer1/ImageUtils.cpp
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layer1/Movie.cpp
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layer1/Ortho.cpp
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layer1/P.cpp
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layer1/PConv.cpp
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layer1/Picking.cpp
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layer1/Pop.cpp
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layer1/PyMOLObject.cpp
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layer1/Ray.cpp
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layer1/Rep.cpp
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layer1/Scene.cpp
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layer1/SceneMouse.cpp
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layer1/ScenePicking.cpp
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layer1/SceneRay.cpp
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layer1/SceneRender.cpp
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layer1/SceneView.cpp
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layer1/ScrollBar.cpp
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layer1/Seq.cpp
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layer1/Setting.cpp
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layer1/Shaker.cpp
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layer1/SymOp.cpp
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layer1/SymOpPConv.cpp
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layer1/SymOpTools.cpp
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layer1/Symmetry.cpp
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layer1/Text.cpp
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layer1/TypeFace.cpp
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layer1/View.cpp
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layer1/Wizard.cpp
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layer2/AssemblyHelpers.cpp
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layer2/AtomInfo.cpp
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layer2/AtomInfoHistory.cpp
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layer2/BondTypeHistory.cpp
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layer2/CifFile.cpp
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layer2/CifMoleculeReader.cpp
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layer2/CoordSet.cpp
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layer2/DistSet.cpp
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layer2/GadgetSet.cpp
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layer2/HydrogenAdder.cpp
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layer2/MmodTyping.cpp
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layer2/MmtfMoleculeReader.cpp
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layer2/Mol2Typing.cpp
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layer2/MolV3000.cpp
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layer2/ObjectAlignment.cpp
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layer2/ObjectCGO.cpp
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layer2/ObjectCallback.cpp
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layer2/ObjectCurve.cpp
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layer2/ObjectDist.cpp
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layer2/ObjectGadget.cpp
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layer2/ObjectGadgetRamp.cpp
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layer2/ObjectGroup.cpp
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layer2/ObjectMap.cpp
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layer2/ObjectMesh.cpp
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layer2/ObjectMolecule.cpp
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layer2/ObjectMolecule2.cpp
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layer2/ObjectMolecule3.cpp
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layer2/ObjectSlice.cpp
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layer2/ObjectSurface.cpp
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layer2/ObjectVolume.cpp
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layer2/RepAngle.cpp
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layer2/RepCartoon.cpp
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layer2/RepCylBond.cpp
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layer2/RepDihedral.cpp
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layer2/RepDistDash.cpp
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layer2/RepDistLabel.cpp
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layer2/RepDot.cpp
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layer2/RepEllipsoid.cpp
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layer2/RepLabel.cpp
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layer2/RepMesh.cpp
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layer2/RepNonbonded.cpp
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layer2/RepNonbondedSphere.cpp
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layer2/RepRibbon.cpp
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layer2/RepSphere.cpp
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layer2/RepSphereGenerate.cpp
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layer2/RepSphereImmediate.cpp
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layer2/RepSurface.cpp
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layer2/RepWireBond.cpp
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layer2/Sculpt.cpp
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layer2/SculptCache.cpp
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layer2/SideChainHelper.cpp
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layer2/VFont.cpp
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layer3/AtomIterators.cpp
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layer3/CifDataValueFormatter.cpp
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layer3/Editor.cpp
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layer3/Executive.cpp
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layer3/ExecutivePython.cpp
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layer3/Interactions.cpp
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layer3/MaeExportHelpers.cpp
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layer3/MoleculeExporter.cpp
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layer3/MovieScene.cpp
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layer3/PlugIOManager.cpp
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layer3/RingFinder.cpp
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layer3/Seeker.cpp
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layer3/Selector.cpp
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layer3/SelectorTmp.cpp
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layer3/SpecRec.cpp
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layer3/SpecRecSpecial.cpp
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layer4/Cmd.cpp
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layer4/Menu.cpp
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layer4/PopUp.cpp
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layer5/PyMOL.cpp
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layer5/TestPyMOL.cpp
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layer5/main.cpp
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modules/chempy/__init__.py
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modules/chempy/arc.py
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modules/chempy/bond_amber.py
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modules/chempy/bond_mmff.py
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modules/chempy/bonds.py
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modules/chempy/brick.py
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modules/chempy/cc1.py
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modules/chempy/charge.py
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modules/chempy/cif.py
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modules/chempy/cpv.py
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modules/chempy/dictdb.py
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modules/chempy/gamess1.py
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modules/chempy/gms.py
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modules/chempy/hetatm.py
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modules/chempy/io.py
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modules/chempy/lst.py
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modules/chempy/mae.py
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modules/chempy/map.py
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modules/chempy/mass.py
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modules/chempy/mmd.py
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modules/chempy/models.py
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modules/chempy/mol.py
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modules/chempy/mol2.py
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modules/chempy/neighbor.py
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modules/chempy/pdb.py
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modules/chempy/pkl.py
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modules/chempy/place.py
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modules/chempy/protein.py
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modules/chempy/protein_amber.py
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modules/chempy/protein_amber99.py
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modules/chempy/protein_mmff.py
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modules/chempy/protein_residues.py
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modules/chempy/sdf.py
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modules/chempy/solvate.py
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modules/chempy/water_amber.py
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modules/chempy/water_residues.py
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modules/chempy/xyz.py
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modules/chempy/bmin/__init__.py
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modules/chempy/bmin/commands.py
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modules/chempy/bmin/realtime.py
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modules/chempy/bmin/state.py
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modules/chempy/bmin/util.py
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modules/chempy/champ/__init__.py
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modules/chempy/champ/amber99.py
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modules/chempy/champ/assign.py
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modules/chempy/champ/formal_charges.py
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modules/chempy/fast/__init__.py
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modules/chempy/fragments/__init__.py
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modules/chempy/mmtf/__init__.py
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modules/chempy/mmtf/io.py
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modules/chempy/tinker/__init__.py
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modules/chempy/tinker/amber.py
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modules/chempy/tinker/keyword.py
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modules/chempy/tinker/realtime.py
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modules/chempy/tinker/state.py
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modules/pmg_qt/TextEditor.py
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modules/pmg_qt/__init__.py
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modules/pmg_qt/advanced_settings_gui.py
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modules/pmg_qt/builder.py
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modules/pmg_qt/file_dialogs.py
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modules/pmg_qt/keymapping.py
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modules/pmg_qt/mimic_pmg_tk.py
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modules/pmg_qt/mimic_tk.py
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modules/pmg_qt/properties_dialog.py
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modules/pmg_qt/pymol_gl_widget.py
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modules/pmg_qt/pymol_qt_gui.py
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modules/pmg_qt/scene_bin_gui.py
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modules/pmg_qt/shortcut_menu_gui.py
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modules/pmg_qt/volume.py
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modules/pmg_qt/forms/__init__.py
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modules/pmg_qt/forms/askpartial.ui
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modules/pmg_qt/forms/change_confirm.ui
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modules/pmg_qt/forms/colors.ui
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modules/pmg_qt/forms/create_shortcut.ui
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modules/pmg_qt/forms/fetch.ui
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modules/pmg_qt/forms/help_shortcut.ui
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modules/pmg_qt/forms/load_aln.ui
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modules/pmg_qt/forms/load_mae.ui
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modules/pmg_qt/forms/load_map.ui
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modules/pmg_qt/forms/load_mtz.ui
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modules/pmg_qt/forms/load_traj.ui
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modules/pmg_qt/forms/movieexport.ui
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modules/pmg_qt/forms/pluginitem.ui
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modules/pmg_qt/forms/pluginmanager.ui
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modules/pmg_qt/forms/png.ui
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modules/pmg_qt/forms/props.ui
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modules/pmg_qt/forms/render.ui
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modules/pmg_qt/forms/save_molecule.ui
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modules/pmg_qt/forms/save_object.ui
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modules/pmg_qt/forms/shortcut_menu.ui
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modules/pmg_qt/syntax/__init__.py
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modules/pmg_qt/syntax/pml.py
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modules/pmg_qt/syntax/pmlparser.py
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modules/pmg_qt/syntax/python.py
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modules/pmg_tk/ColorEditor.py
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modules/pmg_tk/Demo.py
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modules/pmg_tk/PMGApp.py
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modules/pmg_tk/PyMOLMapLoad.py
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modules/pmg_tk/SetEditor.py
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modules/pmg_tk/Setting.py
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modules/pmg_tk/TextEditor.py
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modules/pmg_tk/__init__.py
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modules/pmg_tk/volume.py
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modules/pmg_tk/skins/__init__.py
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modules/pmg_tk/skins/demo/__init__.py
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modules/pmg_tk/skins/normal/ModalWindow.py
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modules/pmg_tk/skins/normal/__init__.py
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modules/pmg_tk/skins/normal/builder.py
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modules/pmg_tk/startup/__init__.py
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modules/pymol/__init__.py
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modules/pymol/__main__.py
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modules/pymol/_gui.py
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modules/pymol/api.py
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modules/pymol/callback.py
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modules/pymol/cgo.py
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modules/pymol/cgobuilder.py
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modules/pymol/checking.py
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modules/pymol/cmd.py
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modules/pymol/colorprinting.py
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modules/pymol/colorramping.py
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modules/pymol/commanding.py
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modules/pymol/completing.py
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modules/pymol/computing.py
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modules/pymol/constants.py
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modules/pymol/constants_palette.py
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modules/pymol/controlling.py
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modules/pymol/creating.py
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modules/pymol/diagnosing.py
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modules/pymol/editing.py
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modules/pymol/editor.py
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modules/pymol/experimenting.py
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modules/pymol/exporting.py
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modules/pymol/externing.py
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modules/pymol/feedingback.py
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modules/pymol/fitting.py
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modules/pymol/gui.py
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modules/pymol/headering.py
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modules/pymol/helping.py
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modules/pymol/importing.py
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modules/pymol/internal.py
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modules/pymol/invocation.py
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modules/pymol/keyboard.py
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modules/pymol/keywords.py
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modules/pymol/lazyio.py
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modules/pymol/locking.py
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modules/pymol/menu.py
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modules/pymol/monitoring.py
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modules/pymol/morphing.py
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modules/pymol/movie.py
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modules/pymol/moving.py
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modules/pymol/mpeg_encode.py
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modules/pymol/parser.py
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modules/pymol/parsing.py
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modules/pymol/povray.py
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modules/pymol/preset.py
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modules/pymol/pymolhttpd.py
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modules/pymol/querying.py
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modules/pymol/rpc.py
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modules/pymol/save_shortcut.py
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modules/pymol/selecting.py
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modules/pymol/selector.py
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modules/pymol/seqalign.py
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modules/pymol/setting.py
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modules/pymol/shortcut.py
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modules/pymol/shortcut_dict.py
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modules/pymol/shortcut_manager.py
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modules/pymol/util.py
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modules/pymol/vfont.py
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modules/pymol/viewing.py
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modules/pymol/wizarding.py
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modules/pymol/xray.py
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modules/pymol/xwin.py
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modules/pymol.egg-info/PKG-INFO
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modules/pymol.egg-info/SOURCES.txt
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modules/pymol.egg-info/dependency_links.txt
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modules/pymol.egg-info/entry_points.txt
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modules/pymol.egg-info/requires.txt
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modules/pymol.egg-info/top_level.txt
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modules/pymol/Qt/__init__.py
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modules/pymol/Qt/utils.py
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modules/pymol/plugins/__init__.py
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modules/pymol/plugins/installation.py
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modules/pymol/plugins/legacysupport.py
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modules/pymol/plugins/managergui.py
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modules/pymol/plugins/managergui_qt.py
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modules/pymol/plugins/repository.py
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modules/pymol/stereochemistry/__init__.py
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modules/pymol/wizard/__init__.py
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modules/pymol/wizard/annotation.py
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modules/pymol/wizard/appearance.py
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modules/pymol/wizard/benchmark.py
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modules/pymol/wizard/box.py
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modules/pymol/wizard/charge.py
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modules/pymol/wizard/cleanup.py
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modules/pymol/wizard/command.py
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modules/pymol/wizard/demo.py
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modules/pymol/wizard/density.py
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modules/pymol/wizard/distance.py
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modules/pymol/wizard/dragging.py
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modules/pymol/wizard/filter.py
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modules/pymol/wizard/label.py
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modules/pymol/wizard/measurement.py
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modules/pymol/wizard/message.py
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modules/pymol/wizard/mutagenesis.py
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modules/pymol/wizard/nucmutagenesis.py
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modules/pymol/wizard/openvr.py
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modules/pymol/wizard/pair_fit.py
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modules/pymol/wizard/pseudoatom.py
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modules/pymol/wizard/renaming.py
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modules/pymol/wizard/sculpting.py
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modules/pymol/wizard/security.py
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modules/pymol/wizard/stereodemo.py
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modules/pymol/wizard/toggle.py
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modules/pymol2/__init__.py
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modules/pymol2/cmd2.py
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modules/web/examples/__init__.py
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modules/web/examples/justhttpd.py
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ov/src/OVContext.cpp
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ov/src/OVHeap.cpp
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ov/src/OVHeapArray.cpp
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ov/src/OVLexicon.cpp
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ov/src/OVOneToAny.cpp
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ov/src/OVOneToOne.cpp
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ov/src/OVRandom.cpp
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ov/src/ov_utility.cpp |