potaserandClaude Opus 5
e641c8b9ab
【轻量拓展分析】 - 新增 gfa_core/extension_stage_lightweight/ 核心模块，支持用户上传代码/数据/原始命令 - 前端卡片式交互流程：候选核对 → 验证 → 结果审查 → 授权发布 → 运行 - Celery 不受限任务 + 轮询机制 + sessionStorage 操作恢复 - 启动脚本新增 BBAV5_LIGHTWEIGHT_* 环境变量 【WGS2GWAS 支持】 - 新增 13 个 WGS 阶段定义（QC → MAF/Missing Filter） - email_haplotype_region.py 新增 LTR-RT 分析功能 【结果区域重构】 - 单层折叠 → 三组双层折叠：RNA-seq / 基因家族 / WGS2GWAS - 结果按执行时间排序，保留最新尝试 【物种角色解析增强】 - 新增 _resolve_subfamily_request_species_roles() - 支持 reference 角色的识别 - 直接 stage 请求保留 intent 中的物种角色 【会话 Job 隔离】 - rebind_job() 跨 job 时创建新会话，返回新 conversation_id 【前端交互增强】 - RAG 文献问答模式 - NL 触发 config/samples 自动填写、亚家族确认表、基因家族成员确认表 - 执行状态从后端 resource_tasks 恢复 Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
78 lines
3.0 KiB
Python
78 lines
3.0 KiB
Python
import asyncio
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import json
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import os
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from pathlib import Path
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def test_result_browser_prefers_latest_manifest_and_shows_subfamily_evidence(monkeypatch, tmp_path):
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from apps.web.vue3 import main as web_main
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workspace_root = tmp_path / "workspace"
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final_dir = workspace_root / "job-results" / "final"
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final_dir.mkdir(parents=True)
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image = final_dir / "Target.PEBP.target-Os.ref-At.subfamily_evidence.motif.png"
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image.write_bytes(b"png")
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success = final_dir / "Target.PEBP.target-Os.ref-At.subfamily_evidence.motif.manifest.json"
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success.write_text(
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json.dumps(
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{
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"stage": "motif",
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"status": "success",
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"prefix": "Os.PEBP",
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"output_prefix": "Target.PEBP.target-Os.ref-At.subfamily_evidence",
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"scope_id": "PEBP.target-Os.ref-At.target_plus_reference",
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"scope_mode": "target_plus_reference",
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"analysis_route": "subfamily_evidence",
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"result_group": "motif_subfamily_evidence",
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"elapsed_sec": 3.0,
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"artifacts": {
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"motif_plot_png": {
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"artifact": "motif_plot",
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"path": f"final/{image.name}",
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"type": "image",
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}
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},
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}
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),
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encoding="utf-8",
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)
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failed = final_dir / "Os.PEBP.target_only.motif.manifest.json"
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failed.write_text(
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json.dumps(
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{
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"stage": "motif",
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"status": "failed",
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"prefix": "Os.PEBP",
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"scope_id": "PEBP.target-Os.target_only",
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"analysis_route": "multi_species",
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"parameters": {"error": "old failed attempt"},
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"artifacts": {},
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}
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),
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encoding="utf-8",
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)
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os.utime(failed, (1, 1))
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os.utime(success, (2, 2))
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monkeypatch.setattr(web_main, "WORKSPACE_ROOT", workspace_root)
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result = asyncio.run(web_main.get_results(job_id="job-results", stage="motif"))
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assert result["motif"]["status"] == "success"
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assert image.name in json.dumps(result["motif"], ensure_ascii=False)
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def test_result_panel_has_three_persistent_workflow_groups():
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html = (Path(__file__).resolve().parents[2] / "apps/web/vue3/index.html").read_text(encoding="utf-8")
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assert "RNA-seq" in html
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assert "基因家族" in html
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assert "WGS2GWAS（遗传变异与群体分析）" in html
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assert "const resultGroups = computed" in html
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assert "const groupStages = stages.filter(stage => resultGroupNameForStage(stage.name) === group.name);" in html
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assert "wgsPopulationGwasResultRank(a.name) - wgsPopulationGwasResultRank(b.name)" in html
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assert "name: 'wgs_qc'" in html
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assert "name: 'wgs_maf_missing_filter'" in html
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assert "await refreshResults(completedJobId, stageName);" in html
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assert "await refreshResults(latestConversation.job_id);" in html
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