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PlantAI-dev/tools/pymol-env/lib/python3.12/site-packages/pymol/computing.py
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2026-08-03 18:42:47 +08:00

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Python

#A* -------------------------------------------------------------------
#B* This file contains source code for the PyMOL computer program
#C* Copyright (c) Schrodinger, LLC
#D* -------------------------------------------------------------------
#E* It is unlawful to modify or remove this copyright notice.
#F* -------------------------------------------------------------------
#G* Please see the accompanying LICENSE file for further information.
#H* -------------------------------------------------------------------
#I* Additional authors of this source file include:
#-*
#-*
#-*
#Z* -------------------------------------------------------------------
import sys
cmd_module = __import__("sys").modules["pymol.cmd"]
import pymol
def clean(selection, present='', state=-1, fix='', restrain='',
method='mmff', async_=0, save_undo=1, message=None,
_self=cmd_module, **kwargs):
'''
DESCRIPTION
Run energy minimization on the given selection, using an MMFF94
force field.
'''
raise pymol.IncentiveOnlyException