PlantAI-dev/rnaseq.before_salmon_downgrade.yml

name: rnaseq
channels:
  - https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
  - conda-forge
  - https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
  - bioconda
  - https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free
  - https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
  - defaults
dependencies:
  - _openmp_mutex=4.5=20_gnu
  - _python_abi3_support=1.0=hd8ed1ab_2
  - _r-mutex=1.0.1=anacondar_1
  - alsa-lib=1.2.15.3=hb03c661_0
  - annotated-types=0.7.0=pyhd8ed1ab_1
  - argcomplete=3.6.3=pyhd8ed1ab_0
  - attrs=26.1.0=pyhcf101f3_0
  - backports.zstd=1.3.0=py311h6b1f9c4_0
  - binutils_impl_linux-64=2.45.1=default_hfdba357_101
  - bioconductor-annotationdbi=1.72.0=r45hdfd78af_0
  - bioconductor-annotationhub=4.0.0=r45hdfd78af_0
  - bioconductor-biobase=2.70.0=r45h01b2380_0
  - bioconductor-biocbaseutils=1.12.0=r45hdfd78af_0
  - bioconductor-biocfilecache=3.0.0=r45hdfd78af_0
  - bioconductor-biocgenerics=0.56.0=r45hdfd78af_2
  - bioconductor-biocparallel=1.44.0=r45ha27e39d_1
  - bioconductor-biocversion=3.22.0=r45hdfd78af_0
  - bioconductor-biostrings=2.78.0=r45h01b2380_0
  - bioconductor-clusterprofiler=4.18.4=r45hdfd78af_0
  - bioconductor-data-packages=20260207=hdfd78af_0
  - bioconductor-dose=4.4.0=r45hdfd78af_0
  - bioconductor-edger=4.8.2=r45h01b2380_0
  - bioconductor-enrichplot=1.30.4=r45hdfd78af_0
  - bioconductor-fgsea=1.36.2=r45ha27e39d_0
  - bioconductor-ggmsa=1.16.0=r45hdfd78af_0
  - bioconductor-ggtree=4.0.4=r45hdfd78af_1
  - bioconductor-go.db=3.22.0=r45hdfd78af_0
  - bioconductor-gosemsim=2.36.0=r45ha27e39d_0
  - bioconductor-graph=1.88.1=r45h01b2380_0
  - bioconductor-impute=1.84.0=r45h63f16b7_0
  - bioconductor-iranges=2.44.0=r45h01b2380_1
  - bioconductor-kegggraph=1.70.0=r45hdfd78af_0
  - bioconductor-keggrest=1.50.0=r45hdfd78af_0
  - bioconductor-limma=3.66.0=r45h01b2380_0
  - bioconductor-org.at.tair.db=3.22.0=r45hdfd78af_0
  - bioconductor-org.hs.eg.db=3.22.0=r45hdfd78af_0
  - bioconductor-pathview=1.50.0=r45hdfd78af_0
  - bioconductor-preprocesscore=1.72.0=r45h01b2380_0
  - bioconductor-qvalue=2.42.0=r45hdfd78af_0
  - bioconductor-r4rna=1.38.0=r45hdfd78af_0
  - bioconductor-rgraphviz=2.54.0=r45h68012da_1
  - bioconductor-s4vectors=0.48.0=r45h01b2380_1
  - bioconductor-seqinfo=1.0.0=r45hdfd78af_0
  - bioconductor-treeio=1.34.0=r45hdfd78af_0
  - bioconductor-tximport=1.38.2=r45hdfd78af_0
  - bioconductor-xvector=0.50.0=r45h01b2380_0
  - biomart=0.9.2=pyhe01879c_0
  - boost-cpp=1.85.0=h3c6214e_4
  - brotli=1.2.0=hed03a55_1
  - brotli-bin=1.2.0=hb03c661_1
  - brotli-python=1.2.0=py311h66f275b_1
  - bwidget=1.10.1=ha770c72_1
  - bzip2=1.0.8=hda65f42_9
  - c-ares=1.34.6=hb03c661_0
  - ca-certificates=2026.5.20=hbd8a1cb_0
  - cairo=1.18.4=h3394656_0
  - certifi=2026.5.20=pyhd8ed1ab_0
  - cffi=2.0.0=py311h03d9500_1
  - charset-normalizer=3.4.6=pyhd8ed1ab_0
  - coloredlogs=15.0.1=pyhd8ed1ab_4
  - colormath=3.0.0=pyhd8ed1ab_4
  - contourpy=1.3.3=py311h724c32c_4
  - cpython=3.11.15=py311hd8ed1ab_0
  - curl=8.18.0=h4e3cde8_0
  - cutadapt=5.2=py311haab0aaa_0
  - cycler=0.12.1=pyhcf101f3_2
  - cyrus-sasl=2.1.28=hd9c7081_0
  - dbus=1.16.2=h24cb091_1
  - dnaio=1.2.2=py311hdad781d_0
  - double-conversion=3.4.0=hecca717_0
  - expat=2.7.4=hecca717_0
  - fastqc=0.12.1=hdfd78af_0
  - font-ttf-dejavu-sans-mono=2.37=hab24e00_0
  - font-ttf-inconsolata=3.000=h77eed37_0
  - font-ttf-source-code-pro=2.038=h77eed37_0
  - font-ttf-ubuntu=0.83=h77eed37_3
  - fontconfig=2.17.1=h27c8c51_0
  - fonts-conda-ecosystem=1=0
  - fonts-conda-forge=1=hc364b38_1
  - fonttools=4.62.0=py311h3778330_0
  - freetype=2.14.2=ha770c72_0
  - fribidi=1.0.16=hb03c661_0
  - gcc_impl_linux-64=15.2.0=he420e7e_18
  - gffread=0.12.7=h077b44d_6
  - gfortran_impl_linux-64=15.2.0=h281d09f_18
  - giflib=5.2.2=hd590300_0
  - glpk=5.0=h445213a_0
  - gmp=6.3.0=hac33072_2
  - graphite2=1.3.14=hecca717_2
  - gsl=2.7=he838d99_0
  - gxx_impl_linux-64=15.2.0=hda75c37_18
  - h2=4.3.0=pyhcf101f3_0
  - harfbuzz=12.2.0=h15599e2_0
  - hdf5=1.14.3=nompi_h2d575fe_109
  - hisat2=2.2.2=h503566f_0
  - hpack=4.1.0=pyhd8ed1ab_0
  - htslib=1.23=h566b1c6_0
  - humanfriendly=10.0=pyh707e725_8
  - humanize=4.15.0=pyhd8ed1ab_0
  - hyperframe=6.1.0=pyhd8ed1ab_0
  - icu=75.1=he02047a_0
  - idna=3.11=pyhd8ed1ab_0
  - isa-l=2.31.1=hb9d3cd8_1
  - jinja2=3.1.6=pyhcf101f3_1
  - jq=1.5=0
  - jsonschema=4.26.0=pyhcf101f3_0
  - jsonschema-specifications=2025.9.1=pyhcf101f3_0
  - kaleido-core=0.2.1=h3644ca4_0
  - kallisto=0.51.1=ha4fb952_1
  - kernel-headers_linux-64=6.12.0=he073ed8_6
  - keyutils=1.6.3=hb9d3cd8_0
  - kiwisolver=1.5.0=py311h724c32c_0
  - krb5=1.21.3=h659f571_0
  - lcms2=2.18=h0c24ade_0
  - ld_impl_linux-64=2.45.1=default_hbd61a6d_101
  - lerc=4.1.0=hdb68285_0
  - libaec=1.1.5=h088129d_0
  - libblas=3.11.0=5_h4a7cf45_openblas
  - libboost=1.85.0=h0ccab89_4
  - libboost-devel=1.85.0=h00ab1b0_4
  - libboost-headers=1.85.0=ha770c72_4
  - libbrotlicommon=1.2.0=hb03c661_1
  - libbrotlidec=1.2.0=hb03c661_1
  - libbrotlienc=1.2.0=hb03c661_1
  - libcblas=3.11.0=5_h0358290_openblas
  - libclang-cpp21.1=21.1.8=default_h99862b1_4
  - libclang-cpp22.1=22.1.0=default_h99862b1_0
  - libclang13=22.1.0=default_h746c552_0
  - libcups=2.3.3=hb8b1518_5
  - libcurl=8.18.0=h4e3cde8_0
  - libdeflate=1.25=h17f619e_0
  - libdrm=2.4.125=hb03c661_1
  - libedit=3.1.20250104=pl5321h7949ede_0
  - libegl=1.7.0=ha4b6fd6_2
  - libev=4.33=hd590300_2
  - libexpat=2.7.4=hecca717_0
  - libffi=3.5.2=h3435931_0
  - libfreetype=2.14.2=ha770c72_0
  - libfreetype6=2.14.2=h73754d4_0
  - libgcc=15.2.0=he0feb66_18
  - libgcc-devel_linux-64=15.2.0=hcc6f6b0_118
  - libgcc-ng=15.2.0=h69a702a_18
  - libgfortran=15.2.0=h69a702a_18
  - libgfortran-ng=15.2.0=h69a702a_18
  - libgfortran5=15.2.0=h68bc16d_18
  - libgl=1.7.0=ha4b6fd6_2
  - libglib=2.86.4=h6548e54_1
  - libglvnd=1.7.0=ha4b6fd6_2
  - libglx=1.7.0=ha4b6fd6_2
  - libgomp=15.2.0=he0feb66_18
  - libhwloc=2.13.0=default_he001693_1000
  - libiconv=1.18=h3b78370_2
  - libjpeg-turbo=3.1.2=hb03c661_0
  - liblapack=3.11.0=5_h47877c9_openblas
  - libllvm21=21.1.8=hf7376ad_0
  - libllvm22=22.1.1=hf7376ad_0
  - liblzma=5.8.2=hb03c661_0
  - liblzma-devel=5.8.2=hb03c661_0
  - libnghttp2=1.67.0=had1ee68_0
  - libnsl=2.0.1=hb9d3cd8_1
  - libntlm=1.8=hb9d3cd8_0
  - libopenblas=0.3.30=pthreads_h94d23a6_4
  - libopengl=1.7.0=ha4b6fd6_2
  - libpciaccess=0.18=hb9d3cd8_0
  - libpng=1.6.55=h421ea60_0
  - libpq=18.1=h5c52fec_2
  - libsanitizer=15.2.0=h90f66d4_18
  - libsqlite=3.52.0=h0c1763c_0
  - libssh2=1.11.1=hcf80075_0
  - libstdcxx=15.2.0=h934c35e_18
  - libstdcxx-devel_linux-64=15.2.0=hd446a21_118
  - libstdcxx-ng=15.2.0=hdf11a46_18
  - libtiff=4.7.1=h9d88235_1
  - libuuid=2.41.3=h5347b49_0
  - libuv=1.51.0=hb03c661_1
  - libvulkan-loader=1.4.341.0=h5279c79_0
  - libwebp-base=1.6.0=hd42ef1d_0
  - libxcb=1.17.0=h8a09558_0
  - libxcrypt=4.4.36=hd590300_1
  - libxkbcommon=1.13.1=hca5e8e5_0
  - libxml2=2.15.1=h26afc86_0
  - libxml2-16=2.15.1=ha9997c6_0
  - libxml2-devel=2.15.1=h26afc86_0
  - libxslt=1.1.43=h711ed8c_1
  - libzlib=1.3.1=hb9d3cd8_2
  - make=4.4.1=hb9d3cd8_2
  - markdown=3.10.2=pyhcf101f3_0
  - markdown-it-py=4.2.0=pyhd8ed1ab_0
  - markupsafe=3.0.3=py311h3778330_1
  - mathjax=2.7.7=ha770c72_3
  - matplotlib=3.10.8=py311h38be061_0
  - matplotlib-base=3.10.8=py311h0f3be63_0
  - mdurl=0.1.2=pyhd8ed1ab_1
  - mimalloc=3.2.8=h54a6638_0
  - multiqc=1.35=pyhdfd78af_1
  - munkres=1.0.7=py_1
  - narwhals=2.21.2=pyhcf101f3_0
  - natsort=8.4.0=pyhcf101f3_2
  - ncurses=6.5=h2d0b736_3
  - networkx=3.6.1=pyhcf101f3_0
  - nspr=4.38=h29cc59b_0
  - nss=3.118=h445c969_0
  - numpy=2.4.2=py311h2e04523_1
  - openjdk=25.0.1=h5755bd7_0
  - openjpeg=2.5.4=h55fea9a_0
  - openldap=2.6.10=he970967_0
  - openssl=3.6.2=h35e630c_0
  - packaging=26.0=pyhcf101f3_0
  - pandas=3.0.1=py311h8032f78_0
  - pandoc=3.9=ha770c72_0
  - pango=1.56.4=hadf4263_0
  - pbzip2=1.1.13=h1fcc475_2
  - pcre2=10.47=haa7fec5_0
  - perl=5.32.1=7_hd590300_perl5
  - pigz=2.8=h421ea60_2
  - pillow=12.1.1=py311hf88fc01_0
  - pip=26.0.1=pyh8b19718_0
  - pixman=0.46.4=h54a6638_1
  - plotly=6.6.0=pyhd8ed1ab_0
  - polars=1.40.1=pyh58ad624_1
  - polars-runtime-32=1.40.1=py310h49dadd8_1
  - polars-runtime-compat=1.40.1=py310hcbd6021_1
  - poppler=26.02.0=h2f68852_0
  - poppler-data=0.4.12=hd8ed1ab_0
  - pthread-stubs=0.4=hb9d3cd8_1002
  - pyaml-env=1.2.2=pyhd8ed1ab_0
  - pycparser=2.22=pyh29332c3_1
  - pydantic=2.13.4=pyhcf101f3_0
  - pydantic-core=2.46.4=py311h902ca64_0
  - pygments=2.20.0=pyhd8ed1ab_0
  - pyparsing=3.3.2=pyhcf101f3_0
  - pyside6=6.10.1=py311he4c1a5a_0
  - pysocks=1.7.1=pyha55dd90_7
  - python=3.11.15=hd63d673_0_cpython
  - python-dateutil=2.9.0.post0=pyhe01879c_2
  - python-dotenv=1.2.2=pyhcf101f3_0
  - python-gil=3.11.15=hd8ed1ab_0
  - python-isal=1.8.0=py311h49ec1c0_1
  - python-kaleido=0.2.1=pyhd8ed1ab_0
  - python-zlib-ng=1.0.0=py311h15805fc_1
  - python_abi=3.11=8_cp311
  - pyyaml=6.0.3=py311h3778330_1
  - qhull=2020.2=h434a139_5
  - qt6-main=6.10.1=h6f76662_3
  - r-ape=5.8_1=r45h3704496_2
  - r-aplot=0.2.9=r45hc72bb7e_1
  - r-argparser=0.7.3=r45hc72bb7e_0
  - r-askpass=1.2.1=r45h54b55ab_1
  - r-assertthat=0.2.1=r45hc72bb7e_6
  - r-backports=1.5.1=r45h54b55ab_0
  - r-base=4.5.2=h835929b_3
  - r-base64enc=0.1_6=r45h54b55ab_0
  - r-bh=1.90.0_1=r45hc72bb7e_0
  - r-biocmanager=1.30.27=r45hc72bb7e_0
  - r-bit=4.6.0=r45h54b55ab_1
  - r-bit64=4.6.0_1=r45h54b55ab_1
  - r-bitops=1.0_9=r45h54b55ab_1
  - r-blob=1.3.0=r45hc72bb7e_0
  - r-bslib=0.10.0=r45hc72bb7e_0
  - r-cachem=1.1.0=r45h54b55ab_2
  - r-checkmate=2.3.3=r45h54b55ab_1
  - r-cli=3.6.5=r45h3697838_1
  - r-clipr=0.8.0=r45hc72bb7e_4
  - r-cluster=2.1.8.2=r45heaba542_0
  - r-codetools=0.2_20=r45hc72bb7e_2
  - r-colorspace=2.1_2=r45h54b55ab_0
  - r-commonmark=2.0.0=r45h54b55ab_1
  - r-cowplot=1.2.0=r45hc72bb7e_2
  - r-cpp11=0.5.3=r45h785f33e_0
  - r-crayon=1.5.3=r45hc72bb7e_2
  - r-crul=1.6.0=r45hc72bb7e_1
  - r-curl=7.0.0=r45h10955f1_1
  - r-data.table=1.17.8=r45h1c8cec4_1
  - r-dbi=1.3.0=r45hc72bb7e_0
  - r-dbplyr=2.5.2=r45hc72bb7e_0
  - r-deldir=2.0_4=r45heaba542_2
  - r-deoptimr=1.1_4=r45hc72bb7e_1
  - r-digest=0.6.39=r45h3697838_0
  - r-doparallel=1.0.17=r45hc72bb7e_4
  - r-dplyr=1.2.0=r45h3697838_0
  - r-dynamictreecut=1.63_1=r45hc72bb7e_1008
  - r-ellipsis=0.3.2=r45h54b55ab_4
  - r-evaluate=1.0.5=r45hc72bb7e_1
  - r-fansi=1.0.7=r45h54b55ab_0
  - r-farver=2.1.2=r45h3697838_2
  - r-fastcluster=1.3.0=r45h3697838_1
  - r-fastmap=1.2.0=r45h3697838_2
  - r-fastmatch=1.1_8=r45h54b55ab_0
  - r-filelock=1.0.3=r45h54b55ab_2
  - r-fit.models=0.64=r45hc72bb7e_4
  - r-fontawesome=0.5.3=r45hc72bb7e_1
  - r-fontbitstreamvera=0.1.1=r45hc72bb7e_1007
  - r-fontliberation=0.1.0=r45hc72bb7e_1007
  - r-fontquiver=0.2.1=r45hc72bb7e_1007
  - r-foreach=1.5.2=r45hc72bb7e_4
  - r-foreign=0.8_91=r45h54b55ab_0
  - r-formatr=1.14=r45hc72bb7e_3
  - r-formula=1.2_5=r45hc72bb7e_3
  - r-fs=1.6.6=r45h3697838_1
  - r-futile.logger=1.4.9=r45hc72bb7e_0
  - r-futile.options=1.0.1=r45hc72bb7e_1006
  - r-gdtools=0.5.0=r45ha0c56d8_0
  - r-generics=0.1.4=r45hc72bb7e_1
  - r-gfonts=0.2.0=r45hc72bb7e_3
  - r-ggforce=0.5.0=r45h3697838_1
  - r-ggfun=0.2.0=r45hc72bb7e_1
  - r-ggiraph=0.9.5=r45h8ff94db_0
  - r-ggnewscale=0.5.2=r45hc72bb7e_1
  - r-ggplot2=4.0.2=r45h785f33e_0
  - r-ggplotify=0.1.3=r45hc72bb7e_1
  - r-ggrepel=0.9.6=r45h3697838_2
  - r-ggtangle=0.1.1=r45hc72bb7e_0
  - r-glue=1.8.0=r45h54b55ab_1
  - r-gridextra=2.3=r45hc72bb7e_1007
  - r-gridgraphics=0.5_1=r45hc72bb7e_4
  - r-gson=0.1.0=r45hc72bb7e_3
  - r-gtable=0.3.6=r45hc72bb7e_1
  - r-highr=0.12=r45hc72bb7e_0
  - r-hmisc=5.2_5=r45heaba542_0
  - r-hms=1.1.4=r45hc72bb7e_0
  - r-htmltable=2.5.0=r45hc72bb7e_0
  - r-htmltools=0.5.9=r45h3697838_0
  - r-htmlwidgets=1.6.4=r45h785f33e_4
  - r-httpcode=0.3.0=r45ha770c72_5
  - r-httpuv=1.6.16=r45h6d565e7_1
  - r-httr=1.4.8=r45hc72bb7e_0
  - r-httr2=1.2.2=r45hc72bb7e_0
  - r-igraph=2.1.4=r45hf411e2a_2
  - r-interp=1.1_6=r45ha36cffa_3
  - r-isoband=0.3.0=r45h3697838_0
  - r-iterators=1.0.14=r45hc72bb7e_4
  - r-jpeg=0.1_11=r45hd0206f1_1
  - r-jquerylib=0.1.4=r45hc72bb7e_4
  - r-jsonlite=2.0.0=r45h54b55ab_1
  - r-knitr=1.51=r45hc72bb7e_0
  - r-labeling=0.4.3=r45hc72bb7e_2
  - r-lambda.r=1.2.4=r45hc72bb7e_5
  - r-later=1.4.8=r45h3697838_0
  - r-lattice=0.22_9=r45h54b55ab_0
  - r-latticeextra=0.6_31=r45hc72bb7e_0
  - r-lazyeval=0.2.2=r45h54b55ab_6
  - r-lifecycle=1.0.5=r45hc72bb7e_0
  - r-locfit=1.5_9.12=r45h54b55ab_1
  - r-magrittr=2.0.4=r45h54b55ab_0
  - r-mass=7.3_65=r45h54b55ab_0
  - r-matrix=1.7_4=r45h0e4624f_1
  - r-matrixstats=1.5.0=r45h54b55ab_1
  - r-memoise=2.0.1=r45hc72bb7e_4
  - r-mime=0.13=r45h54b55ab_1
  - r-munsell=0.5.1=r45hc72bb7e_2
  - r-mvtnorm=1.3_7=r45h11cdb10_0
  - r-nlme=3.1_168=r45heaba542_1
  - r-nnet=7.3_20=r45h54b55ab_1
  - r-openssl=2.3.5=r45h68c19f5_0
  - r-otel=0.2.0=r45hc72bb7e_1
  - r-patchwork=1.3.2=r45hc72bb7e_1
  - r-pcapp=2.0_5=r45h3704496_2
  - r-pheatmap=1.0.13=r45hc72bb7e_1
  - r-pillar=1.11.1=r45hc72bb7e_0
  - r-pkgconfig=2.0.3=r45hc72bb7e_5
  - r-plogr=0.2.0=r45hc72bb7e_1007
  - r-plyr=1.8.9=r45h3697838_3
  - r-png=0.1_8=r45h6b2d295_3
  - r-polyclip=1.10_7=r45h3697838_1
  - r-prettyunits=1.2.0=r45hc72bb7e_2
  - r-progress=1.2.3=r45hc72bb7e_2
  - r-promises=1.5.0=r45hc72bb7e_1
  - r-purrr=1.2.1=r45h54b55ab_0
  - r-r.methodss3=1.8.2=r45hc72bb7e_4
  - r-r.oo=1.27.1=r45hc72bb7e_1
  - r-r.utils=2.13.0=r45hc72bb7e_1
  - r-r6=2.6.1=r45hc72bb7e_1
  - r-rappdirs=0.3.4=r45h54b55ab_0
  - r-rcolorbrewer=1.1_3=r45h785f33e_4
  - r-rcpp=1.1.1=r45h3697838_0
  - r-rcppeigen=0.3.4.0.2=r45h3704496_1
  - r-rcurl=1.98_1.17=r45h46721d4_2
  - r-readr=2.2.0=r45h3697838_0
  - r-reshape2=1.4.5=r45h3697838_0
  - r-rlang=1.1.7=r45h3697838_0
  - r-rmarkdown=2.30=r45hc72bb7e_0
  - r-robust=0.7_5=r45h11cdb10_2
  - r-robustbase=0.99_7=r45h11cdb10_0
  - r-rpart=4.1.27=r45h54b55ab_0
  - r-rrcov=1.7_7=r45h11cdb10_1
  - r-rsqlite=2.4.6=r45h3697838_0
  - r-rstudioapi=0.18.0=r45hc72bb7e_0
  - r-s7=0.2.1=r45h54b55ab_0
  - r-sass=0.4.10=r45h3697838_1
  - r-scales=1.4.0=r45hc72bb7e_1
  - r-scatterpie=0.2.6=r45hc72bb7e_1
  - r-seqmagick=0.1.8=r45h3121a25_1
  - r-shiny=1.13.0=r45h785f33e_0
  - r-snow=0.4_4=r45hc72bb7e_4
  - r-sourcetools=0.1.7_1=r45h3697838_3
  - r-statmod=1.5.2=r45hb1d0f04_0
  - r-stringi=1.8.7=r45h2dae267_1
  - r-stringr=1.6.0=r45h785f33e_0
  - r-survival=3.8_6=r45h54b55ab_0
  - r-sys=3.4.3=r45h54b55ab_1
  - r-systemfonts=1.3.2=r45h74f4acd_0
  - r-tibble=3.3.1=r45h54b55ab_0
  - r-tidydr=0.0.6=r45hc72bb7e_1
  - r-tidyr=1.3.2=r45h3697838_0
  - r-tidyselect=1.2.1=r45hc72bb7e_2
  - r-tidytree=0.4.7=r45hc72bb7e_0
  - r-tinytex=0.58=r45hc72bb7e_0
  - r-triebeard=0.4.1=r45h3697838_4
  - r-tweenr=2.0.3=r45h3697838_2
  - r-tzdb=0.5.0=r45h3697838_2
  - r-urltools=1.7.3.1=r45h3697838_1
  - r-utf8=1.2.6=r45h54b55ab_1
  - r-vctrs=0.7.1=r45h3697838_0
  - r-viridis=0.6.5=r45hc72bb7e_2
  - r-viridislite=0.4.3=r45hc72bb7e_0
  - r-vroom=1.7.1=r45h3697838_0
  - r-wgcna=1.74=r45h0df16ae_1
  - r-withr=3.0.2=r45hc72bb7e_1
  - r-xfun=0.56=r45h3697838_0
  - r-xml=3.99_0.22=r45hf705907_0
  - r-xtable=1.8_8=r45hc72bb7e_0
  - r-yaml=2.3.12=r45h54b55ab_0
  - r-yulab.utils=0.2.4=r45hc72bb7e_0
  - readline=8.3=h853b02a_0
  - referencing=0.37.0=pyhcf101f3_0
  - regex=2026.5.9=py311h49ec1c0_0
  - requests=2.32.5=pyhcf101f3_1
  - rich=15.0.0=pyhcf101f3_0
  - rich-click=1.9.7=pyh8f84b5b_0
  - rpds-py=0.30.0=py311h902ca64_0
  - salmon=1.11.4=h7f96273_0
  - samtools=1.22.1=h96c455f_0
  - sed=4.9=h6688a6e_0
  - setuptools=82.0.1=pyh332efcf_0
  - six=1.17.0=pyhe01879c_1
  - spectra=0.0.11=pyhd8ed1ab_2
  - sqlite=3.52.0=hbc0de68_0
  - stringtie=3.0.0=h29c0135_1
  - subread=2.1.1=h577a1d6_0
  - sysroot_linux-64=2.39=hc4b9eeb_6
  - tbb=2023.0.0=hab88423_2
  - tiktoken=0.12.0=py311h9a14573_3
  - tk=8.6.13=noxft_h366c992_103
  - tktable=2.10=h8d826fa_7
  - toml=0.10.2=pyhcf101f3_3
  - tomlkit=0.14.0=pyha770c72_0
  - tornado=6.5.4=py311h41d9c34_0
  - tqdm=4.67.3=pyh8f84b5b_0
  - typeguard=4.5.2=pyhcf101f3_0
  - typing-extensions=4.15.0=h396c80c_0
  - typing-inspection=0.4.2=pyhcf101f3_2
  - typing_extensions=4.15.0=pyhcf101f3_0
  - tzdata=2025c=hc9c84f9_1
  - unicodedata2=17.0.1=py311h49ec1c0_0
  - urllib3=2.6.3=pyhd8ed1ab_0
  - wayland=1.24.0=hd6090a7_1
  - wheel=0.46.3=pyhd8ed1ab_0
  - xcb-util=0.4.1=h4f16b4b_2
  - xcb-util-cursor=0.1.6=hb03c661_0
  - xcb-util-image=0.4.0=hb711507_2
  - xcb-util-keysyms=0.4.1=hb711507_0
  - xcb-util-renderutil=0.3.10=hb711507_0
  - xcb-util-wm=0.4.2=hb711507_0
  - xkeyboard-config=2.47=hb03c661_0
  - xmltodict=1.0.4=pyhcf101f3_0
  - xopen=2.0.2=pyh707e725_2
  - xorg-libice=1.1.2=hb9d3cd8_0
  - xorg-libsm=1.2.6=he73a12e_0
  - xorg-libx11=1.8.13=he1eb515_0
  - xorg-libxau=1.0.12=hb03c661_1
  - xorg-libxcomposite=0.4.7=hb03c661_0
  - xorg-libxcursor=1.2.3=hb9d3cd8_0
  - xorg-libxdamage=1.1.6=hb9d3cd8_0
  - xorg-libxdmcp=1.1.5=hb03c661_1
  - xorg-libxext=1.3.7=hb03c661_0
  - xorg-libxfixes=6.0.2=hb03c661_0
  - xorg-libxi=1.8.2=hb9d3cd8_0
  - xorg-libxrandr=1.5.5=hb03c661_0
  - xorg-libxrender=0.9.12=hb9d3cd8_0
  - xorg-libxt=1.3.1=hb9d3cd8_0
  - xorg-libxtst=1.2.5=hb9d3cd8_3
  - xorg-libxxf86vm=1.1.7=hb03c661_0
  - xorg-xextproto=7.3.0=hb9d3cd8_1004
  - xz=5.8.2=ha02ee65_0
  - xz-gpl-tools=5.8.2=ha02ee65_0
  - xz-tools=5.8.2=hb03c661_0
  - yaml=0.2.5=h280c20c_3
  - yq=3.4.3=pyhe01879c_2
  - zipp=4.1.0=pyhcf101f3_0
  - zlib=1.3.1=hb9d3cd8_2
  - zlib-ng=2.3.3=hceb46e0_1
  - zstandard=0.25.0=py311haee01d2_1
  - zstd=1.5.7=hb78ec9c_6
  - pip:
      - aiofile==3.11.1
      - anyio==4.13.0
      - authlib==1.7.2
      - backports-tarfile==1.2.0
      - beartype==0.22.9
      - cachetools==7.1.4
      - caio==0.9.25
      - click==8.4.1
      - cryptography==48.0.0
      - cyclopts==4.15.0
      - dnspython==2.8.0
      - docstring-parser==0.18.0
      - email-validator==2.3.0
      - exceptiongroup==1.3.1
      - fastmcp==3.3.1
      - fastmcp-slim==3.3.1
      - griffelib==2.0.2
      - h11==0.16.0
      - httpcore==1.0.9
      - httpx==0.28.1
      - httpx-sse==0.4.3
      - importlib-metadata==9.0.0
      - jaraco-classes==3.4.0
      - jaraco-context==6.1.2
      - jaraco-functools==4.5.0
      - jeepney==0.9.0
      - joserfc==1.6.7
      - jsonref==1.1.0
      - jsonschema-path==0.5.0
      - keyring==25.7.0
      - mcp==1.27.1
      - more-itertools==11.1.0
      - openapi-pydantic==0.5.1
      - opentelemetry-api==1.42.1
      - pathable==0.6.0
      - platformdirs==4.9.6
      - py-key-value-aio==0.4.4
      - pydantic-settings==2.14.1
      - pyjwt==2.13.0
      - pyperclip==1.11.0
      - python-multipart==0.0.29
      - rich-rst==2.0.1
      - secretstorage==3.5.0
      - sse-starlette==3.4.4
      - starlette==1.0.1
      - uncalled-for==0.3.2
      - uvicorn==0.47.0
      - watchfiles==1.2.0
      - websockets==16.0
      - zotero-fulltext==0.3.1
prefix: /home/xia-lab/miniconda3/envs/rnaseq