73 lines
2.4 KiB
Python
Executable File
73 lines
2.4 KiB
Python
Executable File
#!/usr/bin/env python3
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"""Expression Skill 测试 (简化版，无需外部依赖)"""
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import tempfile
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import unittest
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from pathlib import Path
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import sys
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import os
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# 添加父目录到路径
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sys.path.insert(0, str(Path(__file__).parent.parent))
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# 模拟必要的模块
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class MockModule:
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def __getattr__(self, name):
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raise ImportError(f"Module '{name}' not available (for testing)")
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sys.modules['matplotlib'] = MockModule()
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sys.modules['seaborn'] = MockModule()
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sys.modules['sklearn'] = MockModule()
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# 加载配置测试
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class TestExpressionConfig(unittest.TestCase):
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def setUp(self):
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# 只测试配置加载，不导入实际类
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import yaml
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config_path = Path(__file__).parent.parent / "config.yaml"
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with open(config_path) as f:
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self.config = yaml.safe_load(f)
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self.temp_dir = Path(tempfile.mkdtemp())
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def test_config_structure(self):
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"""测试配置结构"""
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self.assertIn("skill", self.config)
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self.assertIn("parameters", self.config)
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self.assertEqual(self.config["skill"]["name"], "expression")
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def test_config_source(self):
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"""测试数据源"""
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self.assertEqual(self.config["skill"]["source"], "bbav2/rnaseq/de_analysis.py")
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def test_parameters(self):
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"""测试参数配置"""
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self.assertIn("statistics", self.config["parameters"])
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self.assertIn("visualization", self.config["parameters"])
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def test_demo_output_structure(self):
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"""测试Demo输出结构"""
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# 创建输出目录
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demo_dir = self.temp_dir / "demo_data"
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demo_dir.mkdir(parents=True, exist_ok=True)
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# 模拟输出文件
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(self.temp_dir / "report.md").write_text("# Test Report")
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(self.temp_dir / "commands.sh").write_text("#!/bin/bash")
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(self.temp_dir / "environment.yml").write_text("name: test")
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(self.temp_dir / "checksums.sha256").write_text("")
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(self.temp_dir / "DE_results.txt").write_text("gene\tlog2FC\tpvalue")
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# 检查文件存在
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self.assertTrue((self.temp_dir / "report.md").exists())
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self.assertTrue((self.temp_dir / "commands.sh").exists())
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self.assertTrue((self.temp_dir / "environment.yml").exists())
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def tearDown(self):
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import shutil
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shutil.rmtree(self.temp_dir, ignore_errors=True)
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if __name__ == "__main__":
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# 只运行配置测试
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unittest.main(exit=False) |