272 lines
8.4 KiB
Python
272 lines
8.4 KiB
Python
from __future__ import annotations
|
|
|
|
import asyncio
|
|
import json
|
|
from typing import Any
|
|
|
|
import pytest
|
|
from pydantic import BaseModel
|
|
|
|
from gfa_core.mas.agents.conversation_tools import ConversationToolRegistry
|
|
from gfa_core.mas.agents.router_runtime import (
|
|
RouteDecision,
|
|
RouterRuntime,
|
|
)
|
|
from gfa_core.mas.llm import LLMResponse, LLMToolCall
|
|
from gfa_core.mas.workflow_models import GoalLedger
|
|
|
|
|
|
class _PassThroughTools:
|
|
@staticmethod
|
|
def resolve_analysis_handoff_request(
|
|
query: str,
|
|
*,
|
|
workflow_id: str | None = None,
|
|
guidance: bool = False,
|
|
language: str = "zh",
|
|
) -> str:
|
|
return query
|
|
|
|
|
|
class _ContextEnrichingTools:
|
|
@staticmethod
|
|
def resolve_analysis_handoff_request(
|
|
query: str,
|
|
*,
|
|
workflow_id: str | None = None,
|
|
guidance: bool = False,
|
|
language: str = "zh",
|
|
) -> str:
|
|
return (
|
|
f"{query}\n已确认上下文:当前 job 的 subfamily_confirm 已成功完成,"
|
|
"家族成员和亚家族分类表已确认。"
|
|
)
|
|
|
|
|
|
class _IntentArgs(BaseModel):
|
|
query: str
|
|
|
|
|
|
class _SequenceLLM:
|
|
def __init__(self, responses: list[LLMResponse]) -> None:
|
|
self.responses = list(responses)
|
|
|
|
async def acall(self, *_args: Any, **_kwargs: Any) -> LLMResponse:
|
|
return self.responses.pop(0)
|
|
|
|
|
|
def _response(content: str = "", *, tool_calls: list[LLMToolCall] | None = None) -> LLMResponse:
|
|
return LLMResponse(
|
|
content=content,
|
|
model="test-model",
|
|
provider="test-provider",
|
|
usage={},
|
|
tool_calls=list(tool_calls or []),
|
|
)
|
|
|
|
|
|
@pytest.mark.parametrize(
|
|
("query", "workflow_id", "clarification_question"),
|
|
(
|
|
(
|
|
"执行rnaseq",
|
|
"rnaseq_whole_genome",
|
|
"请选择全基因组还是基因家族成员RNA-seq",
|
|
),
|
|
("执行全基因组rnaseq", "rnaseq_whole_genome", None),
|
|
("对已确认家族成员执行rnaseq", "rnaseq_family_member", None),
|
|
("执行motif分析", "gene_family", None),
|
|
),
|
|
)
|
|
def test_new_analysis_proposal_preserves_original_request_without_main_agent_planning(
|
|
monkeypatch: pytest.MonkeyPatch,
|
|
query: str,
|
|
workflow_id: str,
|
|
clarification_question: str | None,
|
|
) -> None:
|
|
runtime = RouterRuntime(object(), _PassThroughTools(), max_iterations=5) # type: ignore[arg-type]
|
|
|
|
async def decide_route(**_: Any) -> tuple[RouteDecision, int, list[dict[str, Any]]]:
|
|
return (
|
|
RouteDecision(
|
|
goal="new_analysis",
|
|
needs=["analysis_intent"],
|
|
subject=query,
|
|
clarification_question=clarification_question,
|
|
workflow_id=workflow_id, # type: ignore[arg-type]
|
|
analysis_request_kind="execution",
|
|
),
|
|
1,
|
|
[],
|
|
)
|
|
|
|
monkeypatch.setattr(runtime, "_decide_route", decide_route)
|
|
|
|
outcome = asyncio.run(
|
|
runtime.run(
|
|
query=query,
|
|
history=[],
|
|
session_id="analysis-handoff-session",
|
|
job_id="job-analysis-handoff",
|
|
goal_ledger=GoalLedger(
|
|
conversation_id="analysis-handoff-session",
|
|
revision=0,
|
|
user_terms={"active_job_id": "job-analysis-handoff"},
|
|
),
|
|
)
|
|
)
|
|
|
|
assert outcome.action == "clarify"
|
|
assert outcome.proposal is not None
|
|
assert outcome.proposal["request"] == query
|
|
assert outcome.proposal["original_request"] == query
|
|
assert "workflow_id" not in outcome.proposal
|
|
assert "全基因组还是" not in outcome.message
|
|
|
|
|
|
def test_context_enrichment_does_not_replace_original_analysis_handoff() -> None:
|
|
runtime = RouterRuntime(object(), _ContextEnrichingTools(), max_iterations=5) # type: ignore[arg-type]
|
|
|
|
async def decide_route(**_: Any) -> tuple[RouteDecision, int, list[dict[str, Any]]]:
|
|
return (
|
|
RouteDecision(
|
|
goal="new_analysis",
|
|
needs=["analysis_intent"],
|
|
subject="执行kaks分析",
|
|
workflow_id="gene_family",
|
|
analysis_request_kind="execution",
|
|
),
|
|
1,
|
|
[],
|
|
)
|
|
|
|
runtime._decide_route = decide_route # type: ignore[method-assign]
|
|
outcome = asyncio.run(
|
|
runtime.run(
|
|
query="执行kaks分析",
|
|
history=[],
|
|
session_id="kaks-handoff-session",
|
|
job_id="job-kaks-handoff",
|
|
goal_ledger=GoalLedger(
|
|
conversation_id="kaks-handoff-session",
|
|
revision=0,
|
|
user_terms={"active_job_id": "job-kaks-handoff"},
|
|
),
|
|
)
|
|
)
|
|
|
|
assert outcome.proposal is not None
|
|
assert "subfamily_confirm" in outcome.proposal["request"]
|
|
assert outcome.proposal["original_request"] == "执行kaks分析"
|
|
|
|
|
|
def test_confirmed_analysis_proposal_skips_second_confirmation() -> None:
|
|
job_id = "job-confirmed-analysis-handoff"
|
|
enriched_request = (
|
|
"执行Ft的PPI和kaks分析\n"
|
|
"已确认上下文:基因家族 SPL;目标物种 Ft;参考物种 At。"
|
|
)
|
|
recognized_queries: list[str] = []
|
|
registry = ConversationToolRegistry()
|
|
registry.register(
|
|
name="recognize_analysis_intent",
|
|
description="Recognize an analysis intent.",
|
|
args_model=_IntentArgs,
|
|
handler=lambda args: recognized_queries.append(args.query)
|
|
or {
|
|
"gene_family": "SPL",
|
|
"stages": ["ppi", "kaks"],
|
|
"primary_stage": "ppi",
|
|
"params": {"targetSpecies": ["Ft"], "referenceSpecies": ["At"]},
|
|
},
|
|
permission="pure",
|
|
)
|
|
llm = _SequenceLLM(
|
|
[
|
|
_response(
|
|
tool_calls=[
|
|
LLMToolCall(
|
|
id="recognize-confirmed-analysis-1",
|
|
name="recognize_analysis_intent",
|
|
arguments=json.dumps(
|
|
{"query": enriched_request}, ensure_ascii=False
|
|
),
|
|
)
|
|
]
|
|
),
|
|
_response(
|
|
'{"status":"ok","action":"propose_analysis",'
|
|
'"message":"已交给现有分析系统。"}'
|
|
),
|
|
]
|
|
)
|
|
ledger = GoalLedger(
|
|
conversation_id="session-confirmed-analysis-handoff",
|
|
revision=1,
|
|
user_terms={
|
|
"active_job_id": job_id,
|
|
"pending_proposal": {
|
|
"proposal_id": "proposal-confirmed-analysis",
|
|
"request": enriched_request,
|
|
"original_request": "执行Ft的PPI和kaks分析",
|
|
"subject": "执行Ft的PPI和kaks分析",
|
|
"job_id": job_id,
|
|
},
|
|
},
|
|
)
|
|
|
|
outcome = asyncio.run(
|
|
RouterRuntime(llm, registry, max_iterations=5).run(
|
|
query="继续",
|
|
history=[],
|
|
session_id="session-confirmed-analysis-handoff",
|
|
job_id=job_id,
|
|
goal_ledger=ledger,
|
|
)
|
|
)
|
|
|
|
assert outcome.action == "propose_analysis"
|
|
assert outcome.intent is not None
|
|
assert outcome.intent["stages"] == ["ppi", "kaks"]
|
|
assert recognized_queries == [enriched_request]
|
|
|
|
|
|
def test_new_analysis_decision_discards_main_agent_workflow_and_clarification() -> None:
|
|
decision = RouteDecision(
|
|
goal="new_analysis",
|
|
needs=["analysis_intent"],
|
|
subject="执行rnaseq",
|
|
clarification_question="请选择RNA-seq模式",
|
|
workflow_id="rnaseq_whole_genome",
|
|
analysis_request_kind="execution",
|
|
)
|
|
|
|
normalized = RouterRuntime._analysis_handoff_decision(decision)
|
|
|
|
assert normalized.goal == "new_analysis"
|
|
assert normalized.needs == ["analysis_intent"]
|
|
assert normalized.subject == decision.subject
|
|
assert normalized.workflow_id is None
|
|
assert normalized.clarification_question is None
|
|
assert normalized.analysis_request_kind == "execution"
|
|
|
|
|
|
def test_router_response_language_does_not_rewrite_business_query() -> None:
|
|
query = "执行接下来的分析"
|
|
messages = RouterRuntime._initial_messages(
|
|
query=query,
|
|
history=[],
|
|
session_id="english-router-session",
|
|
job_id="job-english-router",
|
|
decision=RouteDecision(
|
|
goal="general",
|
|
needs=[],
|
|
subject=query,
|
|
),
|
|
goal_ledger=None,
|
|
language="en",
|
|
)
|
|
|
|
assert messages[-1].content == query
|
|
assert "Respond to the user in English." in messages[0].content
|