 admin
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0282cfeeeb
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feat(bioflow): 阶段进度条+滚动日志+点击定位全链;图片注入三修;QA启动就绪等待
- 生信进度:后端新增 stage_progress 事件帧+进度解析白名单(rnaseq_qc/sample_qc),
kernel 日志流式落盘(20行/1s flush+fsync),logs 分页端点(offset/limit/eof),
事件 seq 跨重启扫描续增(2026-09-17 断流修复);前端 FlowProgressCard 确定性/
不确定两态进度条+点击定位到生信任务 TAB,BioJobsPane DAG 行展开滚动日志区
(3s 轮询),log_tail 4000 截断,重跑 stage_started 清零进度
- 图片注入:figures 三源重构(标准DOI图库主路径/遗留体系兜底/PMC兜底),
[[FIG:]] 宽松归一化识别 PMC/PMID/DOI 三种形态,引文兜底扩展至
[PMCID:]/[DOI:] 且标记未满配额继续注入,注入预算 90s/10篇(175 实测校准),
PMC graphic 无 content-type 宽松正则,空结果不缓存(176 冷连接三连败修复)
- QA 启动自愈:start.sh 启动前等 Qdrant readyz(30min)+Neo4j TCP(10min);
backend_guard 标签校验改子集判定
- 样本配对:同 inode 去重优先真实文件,R1/R2 归一配对一对一认领
- gitignore 新增 *.bak-*/*.before-*/bioflow_service/bioflow.db
测试:bioflow_service pytest 358/358,前端 bioflow vitest 205/205
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2026-09-24 16:48:52 +08:00 |
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 adminandClaude Fable 5
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00c77aa323
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feat(aqua): figure chain dual-key generalization (PMCID/DOI)
- answer_composer: prefer [[FIG:PMCID]], fallback [[FIG:DOI:fullDOI]]
- sse_relay: marker regex accepts DOI form; DOI key passed through to figures
- figures: local index dual-key (pmcid + doi via registry paper_id/doi);
resolve_figures recognizes DOI form -> local first, EPMC search
(DOI->PMCID) fallback; silent degrade semantics unchanged
- normalize/humanizer: block protection covers [[FIG:DOI:...]] form
- plant KB unaffected: PMCID path byte-for-byte behavior kept; retrieval
chain untouched; 52 sdk tests pass
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
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2026-09-12 22:19:25 +08:00 |
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jerryandClaude Fable 5
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0875bb036c
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P0/M1: 四部分重构——frontend→ui、backend→sdk 改名 + 引用修复 + 骨架
- git mv 保留历史：ui/(Vue3+Vite)、sdk/(BFF 中间层)
- 路径语义修正：db_path/figures_cache 改相对 sdk/(BFF cwd)，
历史库 sdk/backend/data 迁移至 sdk/data/(会话/图片缓存无损)
- 引用修复 ~15 处：config.py、deploy/*.sh、vitest/playwright 配置、
单测导入路径、docs、README、gitignore、.env.example
- 骨架：agent/{qa,methodology,legacy-rag,vendor}、knowledge/manifest.yaml、
tooling/{compile,kb,crypto,assemble,audit,tools,scripts} + README
- 门禁验证：sdk pytest 125 通过、ui vitest 158 通过、
生产 BFF 脚本重启四上游全绿 + 静态托管 + 会话库无损
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
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2026-08-31 12:56:47 +08:00 |
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