 admin
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0282cfeeeb
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feat(bioflow): 阶段进度条+滚动日志+点击定位全链;图片注入三修;QA启动就绪等待
- 生信进度:后端新增 stage_progress 事件帧+进度解析白名单(rnaseq_qc/sample_qc),
kernel 日志流式落盘(20行/1s flush+fsync),logs 分页端点(offset/limit/eof),
事件 seq 跨重启扫描续增(2026-09-17 断流修复);前端 FlowProgressCard 确定性/
不确定两态进度条+点击定位到生信任务 TAB,BioJobsPane DAG 行展开滚动日志区
(3s 轮询),log_tail 4000 截断,重跑 stage_started 清零进度
- 图片注入:figures 三源重构(标准DOI图库主路径/遗留体系兜底/PMC兜底),
[[FIG:]] 宽松归一化识别 PMC/PMID/DOI 三种形态,引文兜底扩展至
[PMCID:]/[DOI:] 且标记未满配额继续注入,注入预算 90s/10篇(175 实测校准),
PMC graphic 无 content-type 宽松正则,空结果不缓存(176 冷连接三连败修复)
- QA 启动自愈:start.sh 启动前等 Qdrant readyz(30min)+Neo4j TCP(10min);
backend_guard 标签校验改子集判定
- 样本配对:同 inode 去重优先真实文件,R1/R2 归一配对一对一认领
- gitignore 新增 *.bak-*/*.before-*/bioflow_service/bioflow.db
测试:bioflow_service pytest 358/358,前端 bioflow vitest 205/205
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2026-09-24 16:48:52 +08:00 |
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admin
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afa7cce938
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feat(aqua): unlock normalized KB identity via env with plant fallback
- normalized_release EXPECTED_RELEASE defaults to NORMALIZED_RELEASE_ID (plant value)
- from_env falls back to constant on empty env; backend_guard uses env-or-constant
- start.sh sources env/active_library.env after prod.env (qa + legacy-rag)
- build_all.sh --library <name|dir> renders library identity (no name whitelist)
- add kb-libraries skeleton (plant/aqua identity cards) and tooling/aqua_kb
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
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2026-09-12 19:10:08 +08:00 |
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 adminandClaude Fable 5
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a57c1994e8
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feat(deploy): 176 部署完成与启动脚本可移植化
- start.sh×3: venv 解析改为安装包内 ../venv 优先(175 旧路径回退), 176 等目标机免改
- build_all.sh: start_all 模板补 vstore 拉起 + BFF 前 source sdk/.env + PYBIN 可移植解析 + env 目录 mkdir
- DEPLOY_FLOW.md: §5.1 重写(176 实战模板: venv/torch 安装顺序/.env 键/ollama 离线携带/下载源可达性/内网直连), §0 增 176 已部署行
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
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2026-09-09 01:01:30 +08:00 |
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adminandClaude Fable 5
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e151f675f1
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feat(qa-db): QA数据库裸进程标准(deploy/qa-db五脚本+守卫去版本锁定+打包/文档/Excel同步)
- deploy/qa-db/: qdrant/neo4j systemd 裸进程安装脚本+unit模板+整库替换(replace_db.sh)
* 数据双制品模型: <部署根>/qa-db 与 install 分开传输, 支持频繁整库替换
* 免编译(官方静态二进制/tarball)+本地 bin/ 离线分发+国内镜像回退
* 端口 27433/27434+19888/19885(127.0.0.1), 175 docker 容器(27333/19788)为其他项目共享不动
- backend_guard.py: 移除精确计数相等校验(数据库会整库替换/持续更新, 不得锁死版本)
保留身份校验(release/collection/kb_version/标签/关系类型), 计数仅随 health 返回
- qa/scripts/start.sh: reranker 模型路径回退(install/models/bge-reranker-base)
- build_all.sh: qa-db 脚本+reranker 模型入包; .gitignore: qa-db/bin 离线载体
- DEPLOY_FLOW.md: §0/§5.0/§5.0b/§6.0b/§7 QA 数据库裸进程标准
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
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2026-09-08 17:59:53 +08:00 |
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jerryandClaude Fable 5
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4071b29520
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Python 统一 U0-U4:venv py3.12.13 + 四树 cp312 重编译 + 端口互换 8091/8092/8093 + 旧服务停而不删
- U0:新建 plantai-rag-new-venv(3.12.13,130 包),torch 2.13.0+cpu/cython 3.2.8/faiss 1.14.3/openai 3.3.1,requirements.lock 固化
- U1:四树全 venv 重编译(sdk 15/qa 45/methodology 28/legacy 283 .so 全 cp312),audit 双审计过
- U2:备用端口影子对照:金标 search evidence 30/30 与生产一致、SDK pytest 125 过、五上游绿
- U3:统一树切终态 8091/8092/8093 + BFF 8090(venv),停旧服务(容器/进程不删,30 天窗)
- U4:minerupy311→minerupy312 断链修复、GF_PYTHON_ENV 回退统一、start-dev/run/bff_restart 去 conda、server.env/README 更新
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
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2026-09-01 12:23:37 +08:00 |
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jerryandClaude Fable 5
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a990a00eb5
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端口终态修订:BFF 8090 / QA 8091 / Methodology 8092 / legacy 8093
- config.py 默认值改终态(浸泡期 .env 覆盖 7921/8001/7911 继续生效)
- extraction _DEFAULT_ALT=8093;三个 start.sh 默认端口改终态
- 运行中服务零触碰:浸泡端口不变,BFF 未重启,旧服务不动
- 验证:sdk pytest 125 绿,BFF 五上游仍绿(env 覆盖优先)
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
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2026-08-31 16:41:37 +08:00 |
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jerryandClaude Fable 5
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e6efb2bd7a
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P1/M2: agent/qa 源码导入(主项目 d46d02c)
- src/rag/{qa_v1_1_73(41模块),retrieval,dual_kb_taxonomy_rag/entity_alias,normalized_release} = 18.3K 行
- 入口 scripts/qa_v1_1_73_server.py + 4 个 config yaml + requirements
- scripts/{start,stop,status,restart}.sh(端口参数化,影子 7921/生产 7920)
- env/prod.env(容器同源凭据,gitignored) + prod.env.example(占位符)
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
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2026-08-31 13:03:38 +08:00 |
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