jerryandClaude Fable 5
0875bb036c
- git mv 保留历史：ui/(Vue3+Vite)、sdk/(BFF 中间层)
- 路径语义修正：db_path/figures_cache 改相对 sdk/(BFF cwd)，
历史库 sdk/backend/data 迁移至 sdk/data/(会话/图片缓存无损)
- 引用修复 ~15 处：config.py、deploy/*.sh、vitest/playwright 配置、
单测导入路径、docs、README、gitignore、.env.example
- 骨架：agent/{qa,methodology,legacy-rag,vendor}、knowledge/manifest.yaml、
tooling/{compile,kb,crypto,assemble,audit,tools,scripts} + README
- 门禁验证：sdk pytest 125 通过、ui vitest 158 通过、
生产 BFF 脚本重启四上游全绿 + 静态托管 + 会话库无损
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
146 lines
6.8 KiB
JSON
146 lines
6.8 KiB
JSON
{
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"query_id": "q-mock-001",
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"version": "1.1.73-assertion-anchored",
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"mode": "chat",
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"answer": "水稻 **SPL**（SQUAMOSA PROMOTER BINDING PROTEIN-LIKE）基因家族共有 **19 个成员**，主要功能包括：\n\n1. **穗部形态建成**：*OsSPL14*（IPA1/WFP）通过调控分蘖数与穗分枝，是理想株型的关键因子\n2. **生育期调控**：部分成员参与抽穗期的光周期响应\n3. **miR156 调控网络**：多数成员受 miR156 转录后调控，随植株发育表达量上升\n\n| 成员 | 关键功能 | 证据来源 |\n|------|---------|----------|\n| OsSPL14 | 穗分枝、株型建成 | PMID 20393464 |\n| OsSPL7 | 穗发育负调控 | PMID 22429691 |\n| OsSPL16 | 籽粒大小与品质 | PMID 22635119 |\n",
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"source_count": 4,
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"sources": [
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{
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"id": "src-1",
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"title": "Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice",
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"paper_id": "PMID20393464",
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"chunk_id": "chunk_20393464_12",
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"pmid": "20393464",
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"pmcid": null,
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"doi": "10.1038/ng.591",
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"url": "https://doi.org/10.1038/ng.591",
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"snippet": "OsSPL14 positively regulates panicle branching and grain yield in rice, acting as a key factor of ideal plant architecture.",
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"score": 0.92,
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"locator": "Abstract",
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"section": "Results",
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"support_count": 3,
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"type": "assertion",
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"metadata": { "evidence_confidence": "high" }
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},
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{
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"id": "src-2",
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"title": "Genome-wide identification of the SPL gene family in Tartary buckwheat",
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"paper_id": "PMID31286919",
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"chunk_id": "chunk_31286919_07",
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"pmid": "31286919",
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"pmcid": "PMC6612345",
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"doi": "10.1186/s12870-019-1903-y",
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"url": "https://doi.org/10.1186/s12870-019-1903-y",
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"snippet": "A total of 28 SPL genes were identified in Fagopyrum tataricum genome and their expression profiles were analyzed across tissues.",
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"score": 0.85,
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"locator": "Results",
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"section": "Results",
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"support_count": 2,
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"type": "assertion",
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"metadata": {}
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},
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{
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"id": "src-3",
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"title": "OsSPL16 controls grain size and quality via the GW8 pathway",
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"paper_id": "PMID22635119",
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"chunk_id": "chunk_22635119_03",
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"pmid": "22635119",
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"pmcid": null,
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"doi": "10.1038/ng.2327",
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"url": "https://doi.org/10.1038/ng.2327",
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"snippet": "OsSPL16 positively regulates cell proliferation and promotes grain width, improving yield and quality.",
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"score": 0.81,
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"locator": "Abstract",
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"section": "Results",
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"support_count": 1,
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"type": "assertion",
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"metadata": {}
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},
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{
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"id": "src-4",
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"title": "OsSPL7 regulates panicle development in rice",
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"paper_id": "PMID22429691",
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"chunk_id": "chunk_22429691_09",
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"pmid": "22429691",
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"pmcid": "PMC3301234",
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"doi": null,
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"url": "https://pubmed.ncbi.nlm.nih.gov/22429691/",
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"snippet": "OsSPL7 acts as a negative regulator of panicle branching in rice.",
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"score": 0.72,
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"locator": "Results",
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"section": "Results",
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"support_count": 1,
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"type": "assertion",
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"metadata": {}
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}
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],
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"used_sources": [
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{
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"id": "src-1",
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"title": "Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice",
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"paper_id": "PMID20393464",
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"chunk_id": "chunk_20393464_12",
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"pmid": "20393464",
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"pmcid": null,
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"doi": "10.1038/ng.591",
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"url": "https://doi.org/10.1038/ng.591",
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"snippet": "OsSPL14 positively regulates panicle branching and grain yield in rice.",
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"score": 0.92,
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"locator": "Abstract",
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"section": "Results",
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"support_count": 3,
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"type": "assertion",
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"metadata": {}
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}
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],
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"chains": [
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{
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"chain_id": "c1",
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"hops": [
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{ "source": "OsSPL14", "target": "panicle", "relation": "expressed_in", "source_type": "Gene", "target_type": "Tissue", "paper_id": "PMID20393464", "pmid": "20393464", "pmcid": null, "doi": "10.1038/ng.591" },
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{ "source": "OsSPL14", "target": "panicle branching", "relation": "involved_in", "source_type": "Gene", "target_type": "Process", "paper_id": "PMID20393464", "pmid": "20393464", "pmcid": null, "doi": "10.1038/ng.591" }
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]
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},
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{
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"chain_id": "c2",
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"hops": [
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{ "source": "OsSPL14", "target": "miR156", "relation": "regulated_by", "source_type": "Gene", "target_type": "Molecule", "paper_id": "PMID20393464", "pmid": "20393464", "pmcid": null, "doi": "10.1038/ng.591" }
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]
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}
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],
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"graph": {
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"nodes": [
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{ "id": "OsSPL14", "label": "OsSPL14", "type": "Gene" },
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{ "id": "panicle", "label": "panicle", "type": "Tissue" },
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{ "id": "panicle branching", "label": "panicle branching", "type": "Process" },
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{ "id": "miR156", "label": "miR156", "type": "Molecule" },
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{ "id": "OsSPL16", "label": "OsSPL16", "type": "Gene" },
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{ "id": "grain width", "label": "grain width", "type": "Trait" }
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],
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"edges": [
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{ "source": "OsSPL14", "target": "panicle", "relation": "expressed_in", "label": "expressed_in", "chain_id": "c1", "hop": 1, "paper_id": "PMID20393464", "pmid": "20393464", "pmcid": null, "doi": "10.1038/ng.591" },
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{ "source": "OsSPL14", "target": "panicle branching", "relation": "involved_in", "label": "involved_in", "chain_id": "c1", "hop": 2, "paper_id": "PMID20393464", "pmid": "20393464", "pmcid": null, "doi": "10.1038/ng.591" },
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{ "source": "OsSPL14", "target": "miR156", "relation": "regulated_by", "label": "regulated_by", "chain_id": "c2", "hop": 1, "paper_id": "PMID20393464", "pmid": "20393464", "pmcid": null, "doi": "10.1038/ng.591" },
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{ "source": "OsSPL16", "target": "grain width", "relation": "involved_in", "label": "involved_in", "chain_id": "c3", "hop": 1, "paper_id": "PMID22635119", "pmid": "22635119", "pmcid": null, "doi": "10.1038/ng.2327" }
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],
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"chains": [
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{
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"chain_id": "c1",
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"hops": [
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{ "source": "OsSPL14", "target": "panicle", "relation": "expressed_in", "source_type": "Gene", "target_type": "Tissue", "paper_id": "PMID20393464", "pmid": "20393464", "pmcid": null, "doi": "10.1038/ng.591" },
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{ "source": "OsSPL14", "target": "panicle branching", "relation": "involved_in", "source_type": "Gene", "target_type": "Process", "paper_id": "PMID20393464", "pmid": "20393464", "pmcid": null, "doi": "10.1038/ng.591" }
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]
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}
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]
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},
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"retrieval_plan": {
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"anchor_entity": "SPL gene family",
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"relation_family": "function",
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"preferred_papers": ["PMID20393464", "PMID31286919"]
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},
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"retrieval_notes": "graph-balanced top30 evidence chain, with 15 graph-derived items",
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"timing": { "total_s": 41.2, "retrieval_s": 22.1, "generation_s": 19.1 },
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"citation_map": { "1": "PMID20393464", "2": "PMID31286919", "3": "PMID22635119" },
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"raw": {}
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}
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