jerryandClaude Fable 5
2f82c4a8dc
- 按生产 7900 容器黄金清单迁移(compile.manifest 449 条目,0 缺失) - 入口双态:api.app(生产同源 3 路由)/ api.main(裁剪 11 路由族 91 路径) - 修复:advanced/__init__ 空文件(包标记误覆盖,已从主项目恢复) - 修复:api/rag_routes.py 跨环境 site-packages 注入改 LEGACY_GF_SITE_PACKAGES 门控 - 修复:scripts/utils 缺失(动态加载 reasoning_engine) - 影子验证:kg/stats 数据连通(6.2s,与 7900 同源 normalized 后端) Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
74 lines
2.3 KiB
Python
Executable File
74 lines
2.3 KiB
Python
Executable File
#!/usr/bin/env python3
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"""
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选择性展开 - 只展开高置信度的表达关系
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"""
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import json
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def main():
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print("=" * 70)
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print("Selective Expansion - High Confidence Only")
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print("=" * 70)
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# 加载当前结果
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with open('evaluation/auto_results/pmid31286919_ultimate.json') as f:
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current = json.load(f)
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# 找到家族级表达关系
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family_expression = []
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for r in current['relations']:
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rel_type = r.get('type', '')
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source = r.get('source', '')
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if rel_type == 'expressed_in' and source == 'FtSPL':
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family_expression.append(r)
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print(f"\nFound {len(family_expression)} family-level expression relations")
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# 只展开 flower 表达（论文明确说"Most genes expressed in flowers"）
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# 选择 Group_VI 基因（11个基因，论文明确说在 flower 中高表达）
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group_vi_genes = ['FtSPL2', 'FtSPL3', 'FtSPL5', 'FtSPL6', 'FtSPL7',
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'FtSPL8', 'FtSPL9', 'FtSPL10', 'FtSPL15']
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expanded_count = 0
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existing_rels = {(r.get('source'), r.get('type'), r.get('target'))
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for r in current['relations']}
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# 只为 Group_VI 基因添加 flower 表达
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for gene_symbol in group_vi_genes:
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rel_key = (gene_symbol, 'expressed_in', 'flower')
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if rel_key not in existing_rels:
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new_rel = {
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"source": gene_symbol,
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"target": "flower",
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"type": "expressed_in",
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"confidence": "high",
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"note": "Group_VI genes highly expressed in flowers"
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}
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current['relations'].append(new_rel)
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existing_rels.add(rel_key)
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expanded_count += 1
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print(f"\nAdded {expanded_count} selective expression relations")
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# 保存
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output_path = 'evaluation/auto_results/pmid31286919_selective.json'
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with open(output_path, 'w') as f:
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json.dump(current, f, indent=2)
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print(f"\nTotal relations: {len(current['relations'])}")
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print(f"✓ Saved to: {output_path}")
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# 评估
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print("\n" + "=" * 70)
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import subprocess
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subprocess.run([
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'python3', 'evaluation/compare_extraction.py',
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'--gold', 'evaluation/gold_standard/pmid31286919_layer2_full.json',
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'--pred', output_path
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])
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if __name__ == "__main__":
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main()
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