jerryandClaude Fable 5
27946edc2b
- legacy_plantai_server_package/: phase_a–f + compile_* + bin/plantai_admin.py + tools/(audit/elf_visibility/smoke/build_delivery_manifest) 完整基线 - legacy_docker_packager/: protected 形态参考 - crypto/client/: plantai_core.py(AES-GCM 原语) + install_plantai.sh 参考 - secrets/provision 严格排除(gitignore),入 git 前已脱敏清理 - LEGACY_MAPPING.md 记录源与改造方向 Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
53 lines
2.3 KiB
Docker
53 lines
2.3 KiB
Docker
ARG BASE_IMAGE=python:3.11-bookworm
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FROM ${BASE_IMAGE}
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ARG PIP_INDEX_URL=https://pypi.org/simple
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ENV PYTHONUNBUFFERED=1 \
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PYTHONDONTWRITEBYTECODE=1 \
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PIP_DISABLE_PIP_VERSION_CHECK=1 \
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PIP_NO_CACHE_DIR=1 \
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PLANTAI_PROJECT_ROOT=/opt/plantai \
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BBAV5_PROJECT_ROOT=/opt/plantai \
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PLANTAI_RAG_ROOT=/opt/rag \
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GENE_FAMILY_ROOT=/opt/qa \
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PYTHONPATH=/opt/plantai
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# Identify requires the HMMER and NCBI BLAST command-line tools. This is the
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# minimum native runtime, not the old allenv/Conda environment.
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RUN set -eux; \
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if [ -f /etc/apt/sources.list.d/debian.sources ]; then \
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sed -i 's|http://deb.debian.org|https://deb.debian.org|g; s|http://security.debian.org|https://security.debian.org|g' /etc/apt/sources.list.d/debian.sources; \
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fi; \
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if [ -f /etc/apt/sources.list ]; then \
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sed -i 's|http://deb.debian.org|https://deb.debian.org|g; s|http://security.debian.org|https://security.debian.org|g' /etc/apt/sources.list; \
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fi; \
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apt-get -o Acquire::Retries=5 -o Acquire::https::Timeout=60 update; \
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apt-get install -y --no-install-recommends hmmer ncbi-blast+; \
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rm -rf /var/lib/apt/lists/*
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COPY requirements/plantai.txt /tmp/requirements.txt
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RUN python -m pip install --no-cache-dir -r /tmp/requirements.txt \
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&& rm -f /tmp/requirements.txt
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COPY work/context/PlantAI/ /opt/plantai/
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RUN test -f /opt/plantai/.hardened-build.json \
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&& python -c "import sys; assert sys.version_info[:2] == (3, 11)" \
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&& test "$(find /opt/plantai -type f -name '*.so' | wc -l)" -gt 0 \
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&& command -v hmmscan \
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&& command -v hmmsearch \
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&& command -v blastp \
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&& command -v makeblastdb \
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&& test -s /opt/plantai/data/hmm/Pfam-A.hmm \
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&& test -s /opt/plantai/data/hmm/Pfam-A.hmm.h3f \
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&& test -s /opt/plantai/data/hmm/Pfam-A.hmm.h3i \
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&& test -s /opt/plantai/data/hmm/Pfam-A.hmm.h3m \
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&& test -s /opt/plantai/data/hmm/Pfam-A.hmm.h3p \
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&& test -s /opt/plantai/data/rag_db/pfam_mapping.json \
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&& python -c "import json; p=json.load(open('/opt/plantai/data/rag_db/pfam_mapping.json')); assert p['SPL'] == 'PF03110'" \
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&& mkdir -p /runtime/input /runtime/workspace /runtime/data /runtime/logs \
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/runtime/service_data/memory_storage /runtime/service_data/cost_logs \
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/runtime/service_data/reproducibility
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WORKDIR /opt/plantai
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CMD ["python", "apps/web/vue3/main.py"]
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