115 lines
2.4 KiB
TOML
115 lines
2.4 KiB
TOML
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[tool.poetry]
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name = "plantai-rag"
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version = "0.1.0"
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description = "Plant gene-family literature RAG and knowledge extraction system"
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authors = ["PlantAI-rag maintainers"]
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readme = "README.md"
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packages = [{include = "src"}]
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#package-mode = false
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[tool.poetry.dependencies]
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python = "^3.11"
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# Core
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pydantic = "^2.5.0"
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pydantic-settings = "^2.1.0"
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python-dotenv = "^1.0.0"
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# LLM
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openai = "^1.12.0"
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zhipuai = "^2.0.0"
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httpx = "^0.26.0"
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# Agent Framework
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langgraph = "^0.2.0"
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langchain = "^0.3.0"
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langchain-core = "^0.3.0"
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langchain-community = "^0.3.0"
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langsmith = "^0.1.0"
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# Vector Store
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qdrant-client = "^1.7.0"
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pymilvus = "^2.3.0"
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# Database
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sqlalchemy = "^2.0.0"
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asyncpg = "^0.29.0"
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redis = "^5.0.0"
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# Web Framework
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fastapi = "^0.109.0"
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uvicorn = "^0.27.0"
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python-multipart = "^0.0.6"
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websockets = "^12.0"
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# Bioinformatics
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biopython = "^1.83"
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pymupdf = "^1.24.0"
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pandas = "^2.1.0"
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openpyxl = "^3.1.0"
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xlrd = "^2.0.1"
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python-docx = "^1.1.0"
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requests = "^2.31.0"
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# Utilities
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pyyaml = "^6.0.1"
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rich = "^13.7.0"
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loguru = "^0.7.2"
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tenacity = "^8.2.3"
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aiofiles = "^23.2.1"
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neo4j = "^6.1.0"
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[tool.poetry.group.dev.dependencies]
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pytest = "^7.4.0"
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pytest-asyncio = "^0.23.0"
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pytest-cov = "^4.1.0"
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ruff = "^0.1.0"
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mypy = "^1.8.0"
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chardet = "^7.0.1"
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jieba = "^0.42.1"
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[tool.poetry.scripts]
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start = "api.main:run"
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[build-system]
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requires = ["poetry-core"]
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build-backend = "poetry.core.masonry.api"
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[tool.ruff]
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line-length = 100
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target-version = "py311"
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[tool.mypy]
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python_version = "3.11"
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strict = true
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[tool.pytest.ini_options]
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testpaths = ["tests"]
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norecursedirs = [
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"archive",
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"tests/archive",
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]
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python_files = [
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"test_functional_surface_parity.py",
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"test_api_app.py",
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"test_llm_definition_generator_config.py",
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"test_llm_provider_guardrails.py",
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"test_migration_requirements_audit.py",
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"test_methodology_alignment_real_case.py",
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"test_methodology_duplicate_rules.py",
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"test_methodology_identification_inputs.py",
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"test_methodology_mineru_gpu_preflight.py",
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"test_methodology_plan_bridge.py",
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"test_methodology_qa_sandbox.py",
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"test_neo4j_config_env.py",
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"test_open_source_audit.py",
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"test_paper_metadata_enricher_identity.py",
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"test_project_path_fallbacks.py",
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"test_runtime_surface_manifest.py",
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"test_temporal.py",
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"test_vlm_image_extractor_config.py",
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"test_v16_batch_runner.py",
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"test_v16_local_baseline.py",
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"test_v16_validation_contract.py",
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]
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