Files
PlantAI-rag/configs/rag/relation_taxonomy.yaml
2026-07-10 17:59:59 +08:00

201 lines
3.7 KiB
YAML

expression:
location:
- expressed_in
- highly_expressed_in
- predominantly_expressed_in
- accumulated_at_higher_level_in
- detected_in
- enriched_in
up:
- upregulated_in
- induced_under
- induced_in
- increased_in
- increased_under
- enhanced_expression_in
- accumulated_at_higher_level_in
down:
- downregulated_in
- decreased_in
- decreased_under
- reduced_in
- repressed_in
condition:
- differentially_expressed_under
- expression_changed_under
- expression_changed_in
- responds_to
- responsive_to
- not_induced_under
catalog_count:
- has_member_count
- identified_in
- systematically_identified_in
- genome_wide_identified_in
- were_identified_in
- was_identified_in
- identified
- were identified in
- was identified in
- identified in
- contains
- contain
- encodes
- include
- includes
- had
- has_number_of_members
- comprehensively_analyzed_in
- analyzed_in
- surveyed_in
classification:
- belongs_to
- member_of
- classified_into
- divided_into
- separated_into
- grouped_into
- clustered_with
localization:
- localizes_to
- located_in
- predicted_to_localize_to
- subcellular_localized_to
structure:
- contains_domain
- contains_motif
- contains_cis_element
- has_intron_count
- has_exon_count
- has_conserved_domain
- lacks_binding_site_for
function_effect:
- promotes
- inhibits
- enhances
- reduces
- affects
- regulates
- involved_in
- participates_in
- contributes_to
- associated_with
perturbation_effect:
- overexpression_increases
- overexpression_enhances
- overexpression_promotes
- overexpression_causes
- knockdown_reduces
- knockdown_enhances
- silencing_reduces
- mutation_affects
method:
- used_tool
- analyzed_by
- predicted_by
- aligned_with
- constructed_with
- identified_by
dataset:
- has_accession
- available_at
- has_data_type
- from_database
- from_article
- used_for
prior_work:
- reported_in
- previously_reported_in
- cited_as
- known_to
stress_response:
- responds_to
- responsive_to
- induced_by
- induced_under
- induced_in
- upregulated_under
- upregulated_in
- involved_in_stress_response
- associated_with_stress_tolerance
- confers_tolerance_to
- enhances_tolerance_to
- improves_tolerance_to
- stress tolerance
- abiotic stress
- biotic stress
detoxification:
- involved_in_detoxification
- detoxifies
- detoxification
- conjugates_with_glutathione
- catalyzes_glutathione_conjugation
- scavenges
- removes
- clears
- reduces_ros
- maintains_redox_homeostasis
- glutathione conjugation
- xenobiotic detoxification
oxidative_stress:
- scavenges_ros
- scavenges_h2o2
- reduces_h2o2
- regulates_redox_homeostasis
- enhances_oxidative_stress_tolerance
- involved_in_antioxidant_response
- reactive oxygen species
- oxidative stress
- redox homeostasis
functional_validation:
- overexpression_enhances
- overexpression_increases
- overexpression_confers
- overexpression_improves
- overexpression_promotes
- over-expression
- overexpression
- co_expression_enhances
- co-expression
- transgenic
- mutation_affects
- knockdown_reduces
- silencing_reduces
family_expansion:
- expanded_by
- tandemly_duplicated
- segmentally_duplicated
- retained_after_wgd
- underwent_positive_selection
- functionally_diverged
- supergene family
- gene family expansion
- tandem duplication
- segmental duplication
- positive selection
signaling_regulation:
- upregulated_by
- activated_by
- regulated_by
- downstream_of
- target_of
- ABA signaling
- signal transduction
- kinase