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- 生信进度:后端新增 stage_progress 事件帧+进度解析白名单(rnaseq_qc/sample_qc), kernel 日志流式落盘(20行/1s flush+fsync),logs 分页端点(offset/limit/eof), 事件 seq 跨重启扫描续增(2026-09-17 断流修复);前端 FlowProgressCard 确定性/ 不确定两态进度条+点击定位到生信任务 TAB,BioJobsPane DAG 行展开滚动日志区 (3s 轮询),log_tail 4000 截断,重跑 stage_started 清零进度 - 图片注入:figures 三源重构(标准DOI图库主路径/遗留体系兜底/PMC兜底), [[FIG:]] 宽松归一化识别 PMC/PMID/DOI 三种形态,引文兜底扩展至 [PMCID:]/[DOI:] 且标记未满配额继续注入,注入预算 90s/10篇(175 实测校准), PMC graphic 无 content-type 宽松正则,空结果不缓存(176 冷连接三连败修复) - QA 启动自愈:start.sh 启动前等 Qdrant readyz(30min)+Neo4j TCP(10min); backend_guard 标签校验改子集判定 - 样本配对:同 inode 去重优先真实文件,R1/R2 归一配对一对一认领 - gitignore 新增 *.bak-*/*.before-*/bioflow_service/bioflow.db 测试:bioflow_service pytest 358/358,前端 bioflow vitest 205/205
69 lines
2.5 KiB
Bash
Executable File
69 lines
2.5 KiB
Bash
Executable File
#!/usr/bin/env bash
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# agent/qa/scripts/start.sh —— QA V1.1.73 服务唯一启动接口
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# 用法：bash scripts/start.sh [port] （默认 8091 终态；浸泡期影子用 7921）
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set -euo pipefail
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AGENT_ROOT="$(cd "$(dirname "${BASH_SOURCE[0]}")/.." && pwd)"
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PORT="${1:-8091}" # 终态端口
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ENV_FILE="${QA_ENV_FILE:-$AGENT_ROOT/env/prod.env}"
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LOG_FILE="${QA_LOG_FILE:-/tmp/plantai-agent-qa-$PORT.log}"
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PID_FILE="$AGENT_ROOT/run/qa-$PORT.pid"
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PYTHON="${QA_PYTHON:-$AGENT_ROOT/../venv/bin/python}"
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[[ -x "$PYTHON" ]] || PYTHON="/home/xzq/5090/teamWorkspace/zh/plantai-rag-new-venv/bin/python"
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mkdir -p "$AGENT_ROOT/run"
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[[ -x "$PYTHON" ]] || { echo "QA Python 不可执行: $PYTHON" >&2; exit 1; }
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[[ -f "$ENV_FILE" ]] || { echo "缺少 env 文件: $ENV_FILE" >&2; exit 1; }
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if [[ -f "$PID_FILE" ]] && kill -0 "$(cat "$PID_FILE")" 2>/dev/null; then
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echo "QA 已在运行 pid=$(cat "$PID_FILE")" >&2
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exit 1
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fi
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set -a
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# shellcheck disable=SC1090
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. "$ENV_FILE"
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set +a
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if [[ -f "$AGENT_ROOT/env/active_library.env" ]]; then
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set -a; . "$AGENT_ROOT/env/active_library.env"; set +a
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fi
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# ---- 开机自愈:后端校验(Qdrant/Neo4j)失败即崩且零重试,启动前必须等依赖就绪(2026-09-23) ----
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QD_READYZ="${QDRANT_URL:-http://127.0.0.1:27433}/readyz"
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QD_DEADLINE=$(( $(date +%s) + 1800 ))
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until curl -sf --max-time 3 "$QD_READYZ" >/dev/null 2>&1; do
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[ "$(date +%s)" -ge "$QD_DEADLINE" ] && { echo "[qa] Qdrant 30 分钟未就绪,放弃启动" >&2; exit 1; }
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sleep 5
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done
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N4_HP="${NEO4J_URI#bolt://}"; N4_H="${N4_HP%:*}"; N4_P="${N4_HP##*:}"
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N4_DEADLINE=$(( $(date +%s) + 600 ))
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until timeout 3 bash -c "echo > /dev/tcp/$N4_H/$N4_P" 2>/dev/null; do
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[ "$(date +%s)" -ge "$N4_DEADLINE" ] && { echo "[qa] Neo4j 10 分钟未就绪,放弃启动" >&2; exit 1; }
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sleep 5
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done
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# ---- 就绪等待结束 ----
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# reranker 模型路径回退：env 未指定时用安装包内模型（install/models/bge-reranker-base）
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if [[ -z "${QA_V1_BGE_RERANKER_MODEL:-}" && -d "$AGENT_ROOT/../models/bge-reranker-base" ]]; then
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export QA_V1_BGE_RERANKER_MODEL="$AGENT_ROOT/../models/bge-reranker-base"
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fi
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cd "$AGENT_ROOT"
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setsid "$PYTHON" -m uvicorn scripts.qa_v1_1_73_server:app \
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--host 127.0.0.1 --port "$PORT" \
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> "$LOG_FILE" 2>&1 < /dev/null &
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echo $! > "$PID_FILE"
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disown
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for _ in $(seq 1 30); do
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if curl -sf --max-time 3 "http://127.0.0.1:$PORT/health" >/dev/null 2>&1; then
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echo "QA UP (127.0.0.1:$PORT, pid=$(cat "$PID_FILE"))"
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exit 0
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fi
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sleep 2
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done
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echo "QA FAIL —— 日志尾部：" >&2
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tail -30 "$LOG_FILE" >&2
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exit 1
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