forked from admin/PlantAI-rag-new
adminandClaude Fable 5
f0a1711ebc
- batch_runner: sanitize paper_id to disk dir name (was skipping all papers whose paper_id contains :/()); keeps explicit result path compat; verified 5/5 no-skip on paren-DOI papers - qdrant_loader: batch embed via Ollama array input (32/batch, 14x: 2.7 -> 36.9 texts/s, 24.5k points ~10min vs 2.5h); per-batch fail falls back to single; checkpoint format unchanged - entity_alias_aqua: +Streptococcus agalactiae (GBS), RAS (forbidden_expansions), Danio rerio; merged vernacular/Chinese aliases for O. niloticus / O. mykiss / S. salar / L. vannamei; g02 gap entities now normalize correctly - note for P3: ingest manifest MUST carry paper sidecar (pilot manifest_pilot.json does not - would emit paper_id="result" dirt) Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
301 lines
5.2 KiB
YAML
301 lines
5.2 KiB
YAML
Litopenaeus vannamei:
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type: species
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aliases:
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- Litopenaeus vannamei
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- L. vannamei
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- Penaeus vannamei
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- whiteleg shrimp
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- white leg shrimp
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- Pacific white shrimp
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- Pacific whiteleg shrimp
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- white shrimp
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- vannamei shrimp
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- 凡纳滨对虾
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- 凡纳对虾
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- 南美白对虾
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- 白对虾
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- 对虾
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forbidden_expansions:
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- Penaeus monodon
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- P. monodon
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Penaeus monodon:
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type: species
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aliases:
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- Penaeus monodon
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- P. monodon
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- black tiger shrimp
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- tiger prawn
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- giant tiger prawn
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- 斑节对虾
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- 草虾
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Macrobrachium rosenbergii:
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type: species
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aliases:
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- Macrobrachium rosenbergii
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- M. rosenbergii
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- giant freshwater prawn
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- giant river prawn
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- 罗氏沼虾
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Oreochromis niloticus:
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type: species
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retrieval_label: tilapia
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aliases:
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- Oreochromis niloticus
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- O. niloticus
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- Nile tilapia
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- tilapia
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- 罗非鱼
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- 尼罗罗非鱼
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- 红罗非鱼
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forbidden_expansions:
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- Oreochromis mossambicus
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- O. mossambicus
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- 莫桑比克罗非鱼
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Oncorhynchus mykiss:
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type: species
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aliases:
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- Oncorhynchus mykiss
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- O. mykiss
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- rainbow trout
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- steelhead trout
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- steelhead
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- 虹鳟
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- 虹鳟鱼
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Salmo salar:
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type: species
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aliases:
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- Salmo salar
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- S. salar
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- Atlantic salmon
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- salmon
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- 大西洋鲑
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- 大西洋鲑鱼
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- 三文鱼
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forbidden_expansions:
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- Oncorhynchus
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- Pacific salmon
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- 太平洋鲑
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Ctenopharyngodon idella:
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type: species
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aliases:
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- Ctenopharyngodon idella
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- C. idella
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- grass carp
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- white amur
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- 草鱼
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Cyprinus carpio:
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type: species
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aliases:
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- Cyprinus carpio
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- C. carpio
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- common carp
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- carp
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- 鲤
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- 鲤鱼
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forbidden_expansions:
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- Ctenopharyngodon idella
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- grass carp
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- 草鱼
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Lateolabrax maculatus:
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type: species
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aliases:
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- Lateolabrax maculatus
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- L. maculatus
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- spotted sea bass
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- Chinese sea bass
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- sea bass
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- 花鲈
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- 鲈鱼
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Larimichthys crocea:
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type: species
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aliases:
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- Larimichthys crocea
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- L. crocea
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- large yellow croaker
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- yellow croaker
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- 大黄鱼
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Crassostrea gigas:
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type: species
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aliases:
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- Crassostrea gigas
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- C. gigas
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- Magallana gigas
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- Pacific oyster
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- oyster
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- 长牡蛎
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- 牡蛎
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Chlamys farreri:
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type: species
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aliases:
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- Chlamys farreri
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- C. farreri
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- Azumapecten farreri
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- Zhikong scallop
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- Farrer's scallop
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- 栉孔扇贝
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- 扇贝
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Ruditapes philippinarum:
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type: species
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aliases:
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- Ruditapes philippinarum
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- R. philippinarum
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- Venerupis philippinarum
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- Manila clam
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- Japanese littleneck clam
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- clam
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- 菲律宾蛤仔
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- 花蛤
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Saccharina japonica:
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type: species
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aliases:
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- Saccharina japonica
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- S. japonica
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- Laminaria japonica
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- kelp
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- sea tangle
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- 海带
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Undaria pinnatifida:
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type: species
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aliases:
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- Undaria pinnatifida
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- U. pinnatifida
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- wakame
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- 裙带菜
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Apostichopus japonicus:
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type: species
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aliases:
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- Apostichopus japonicus
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- A. japonicus
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- Stichopus japonicus
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- Japanese sea cucumber
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- sea cucumber
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- 仿刺参
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- 海参
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Streptococcus agalactiae:
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type: species
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aliases:
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- Streptococcus agalactiae
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- S. agalactiae
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- group B Streptococcus
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- group B streptococcus
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- GBS
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- 无乳链球菌
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- B族链球菌
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forbidden_expansions:
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- Guillain-Barré syndrome
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- Guillain-Barre syndrome
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- 格林巴利
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Danio rerio:
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type: species
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aliases:
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- Danio rerio
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- D. rerio
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- Brachydanio rerio
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- zebrafish
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- zebra fish
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- zebra danio
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- 斑马鱼
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RAS:
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type: culture_system
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retrieval_label: recirculating aquaculture system
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aliases:
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- RAS
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- recirculating aquaculture system
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- recirculating aquaculture systems
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- recirculation aquaculture system
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- 循环水养殖系统
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- 循环水养殖
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- 工厂化循环水养殖
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forbidden_expansions:
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- Renin-angiotensin system
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- renin angiotensin system
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- RAS-related protein
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- Ras GTPase
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- RAS signaling
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- reticular activating system
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growth performance:
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type: phenotype
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aliases:
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- growth performance
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- growth
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- specific growth rate
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- SGR
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- weight gain
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- WG
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- body weight gain
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- 生长性能
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- 生长
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retrieval_terms:
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- final body weight
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- FBW
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feed conversion:
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type: phenotype
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aliases:
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- feed conversion ratio
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- FCR
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- feed conversion efficiency
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- FCE
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- feed efficiency
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- 饲料转化率
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- 饲料系数
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survival:
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type: phenotype
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aliases:
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- survival rate
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- survival
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- SR
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- cumulative survival
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- 存活率
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- 成活率
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immunity:
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type: phenotype
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aliases:
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- immunity
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- immune response
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- innate immunity
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- immune defense
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- 免疫
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- 免疫应答
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disease resistance:
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type: phenotype
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aliases:
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- disease resistance
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- pathogen resistance
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- resistance
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- 抗病性
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- 抗病力
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hypoxia:
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type: environmental_factor
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aliases:
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- hypoxia
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- hypoxic stress
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- low oxygen
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- dissolved oxygen
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- DO
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- 低氧
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- 缺氧
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