72 lines
2.6 KiB
Python
Executable File
72 lines
2.6 KiB
Python
Executable File
#!/usr/bin/env python3
|
|
from __future__ import annotations
|
|
|
|
import json
|
|
import sys
|
|
import tempfile
|
|
from pathlib import Path
|
|
|
|
ROOT = Path(__file__).resolve().parents[1]
|
|
if str(ROOT) not in sys.path:
|
|
sys.path.insert(0, str(ROOT))
|
|
|
|
from apps.web.vue3 import main as web_main
|
|
|
|
|
|
def require(condition: bool, message: str) -> None:
|
|
if not condition:
|
|
raise AssertionError(message)
|
|
|
|
|
|
def main() -> int:
|
|
with tempfile.TemporaryDirectory(prefix="bbav5_subfamily_scope_") as tmp:
|
|
root = Path(tmp)
|
|
job_id = "job_scope_evidence"
|
|
final_dir = root / "workspace" / job_id / "final"
|
|
final_dir.mkdir(parents=True)
|
|
web_main.WORKSPACE_ROOT = root / "workspace"
|
|
web_main.INPUT_ROOT = root / "input"
|
|
web_main.INPUT_ROOT.mkdir(parents=True, exist_ok=True)
|
|
|
|
combo_png = final_dir / "Lc.SPL.target_plus_reference.combo.png"
|
|
combo_png.write_bytes(b"fake png bytes")
|
|
tree_png = final_dir / "Target.SPL.target-Lc.ref-At.subfamily_prediction.reference_classification.tree.png"
|
|
tree_png.write_bytes(b"fake tree png")
|
|
|
|
aggregate_manifest = {
|
|
"manifest_version": "1.0",
|
|
"stage": "reference_classification",
|
|
"status": "success",
|
|
"prefix": "Lc.SPL",
|
|
"output_prefix": "Target.SPL.target-Lc.ref-At.subfamily_prediction",
|
|
"scope_id": "SPL.target-Lc.ref-At.target_plus_reference",
|
|
"analysis_route": "subfamily_prediction",
|
|
"per_species_results": [
|
|
{
|
|
"species": "Lc",
|
|
"prefix": "Lc.SPL",
|
|
"combo": str(combo_png),
|
|
"tree": str(tree_png),
|
|
}
|
|
],
|
|
"artifacts": {},
|
|
}
|
|
(final_dir / "Target.SPL.target-Lc.ref-At.subfamily_prediction.reference_classification.manifest.json").write_text(
|
|
json.dumps(aggregate_manifest), encoding="utf-8"
|
|
)
|
|
|
|
assets, missing = web_main._subfamily_evidence_assets(job_id, "Target.SPL.target-Lc.ref-At.subfamily_prediction")
|
|
combo_assets = [a for a in assets if a.get("group") == "rect_combo"]
|
|
require(combo_assets, f"rect_combo missing; assets={assets}, missing={missing}")
|
|
require(
|
|
combo_assets[0].get("name") == "Lc.SPL.target_plus_reference.combo.png",
|
|
f"expected same-scope combo asset, got {combo_assets}",
|
|
)
|
|
require("rect_combo" not in missing, f"rect_combo incorrectly marked missing: {missing}")
|
|
print("PASS subfamily evidence resolves same-scope combo from manifest per_species_results")
|
|
return 0
|
|
|
|
|
|
if __name__ == "__main__":
|
|
raise SystemExit(main())
|