39 lines
1.0 KiB
YAML
Executable File
39 lines
1.0 KiB
YAML
Executable File
# Functional Annotation Skill Configuration (API Mode)
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# 功能注释技能配置（API模式）- 无需下载数据库
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skill:
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name: annotation-api
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version: "1.0.0"
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description: "功能注释分析 - eggNOG API（在线模式）"
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author: "bbav20311-team"
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input:
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protein_fasta: null # 必需: 蛋白序列FASTA文件
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parameters:
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api:
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# API 模式参数
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delay: 1.0 # API请求间隔(秒)，建议1.0-2.0避免限流
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timeout: 60 # 请求超时(秒)
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db: "euk" # 数据库: euk(真核)/bact(细菌)/arch(古菌)
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# 过滤参数
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min_seq_length: 10 # 最小序列长度
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max_seq_length: 50000 # 最大序列长度(防止过大序列)
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output:
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format: ["gene2go"] # 输出格式
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include_reproducibility: true
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dependencies:
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conda:
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channels:
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- conda-forge
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packages:
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- python=3.9
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- requests=2.31.0
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- pyyaml=6.0.1
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# 使用示例:
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# python run_api.py --input protein.fa --output ./annotation --config config_api.yaml
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