55 lines
1.8 KiB
Python
55 lines
1.8 KiB
Python
from gfa_core.mas.agents.planning_v2 import PlanningAgentV2
|
|
|
|
|
|
def test_ppi_species_does_not_change_unrelated_stage_biological_scope() -> None:
|
|
planner = PlanningAgentV2.__new__(PlanningAgentV2)
|
|
|
|
stages = planner._generate_default_stages(
|
|
["motif", "ppi"],
|
|
"Ft.SPL",
|
|
intent_params={
|
|
"geneFamily": "SPL",
|
|
"targetSpecies": ["Ft"],
|
|
"scopeMode": "target_only",
|
|
"analysisRoute": "single_species",
|
|
"ppiSpecies": "ath",
|
|
},
|
|
)
|
|
|
|
stage_by_id = {stage["id"]: stage for stage in stages}
|
|
motif_params = stage_by_id["motif"]["params"]
|
|
ppi_params = stage_by_id["ppi"]["params"]
|
|
|
|
assert motif_params["targetSpecies"] == ["Ft"]
|
|
assert motif_params["scopeMode"] == "target_only"
|
|
assert motif_params["analysisRoute"] == "single_species"
|
|
assert not motif_params.get("referenceSpecies")
|
|
assert ppi_params["ppiSpecies"] == "ath"
|
|
|
|
|
|
def test_ppi_plan_is_target_only_while_kaks_keeps_project_reference() -> None:
|
|
planner = PlanningAgentV2.__new__(PlanningAgentV2)
|
|
|
|
stages = planner._generate_default_stages(
|
|
["ppi", "kaks"],
|
|
"Ft.SPL",
|
|
intent_params={
|
|
"geneFamily": "SPL",
|
|
"targetSpecies": ["Ft"],
|
|
"referenceSpecies": ["At"],
|
|
"scopeMode": "target_plus_reference",
|
|
"analysisRoute": "multi_species",
|
|
},
|
|
)
|
|
|
|
stage_by_id = {stage["id"]: stage for stage in stages}
|
|
ppi_params = stage_by_id["ppi"]["params"]
|
|
kaks_params = stage_by_id["kaks"]["params"]
|
|
|
|
assert ppi_params["targetSpecies"] == ["Ft"]
|
|
assert ppi_params["referenceSpecies"] == []
|
|
assert ppi_params["scopeMode"] == "target_only"
|
|
assert ppi_params["analysisRoute"] == "single_species"
|
|
assert kaks_params["referenceSpecies"] == ["At"]
|
|
assert kaks_params["scopeMode"] == "target_plus_reference"
|