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potaserandClaude Opus 5 a2e8cbae86 fix(lightweight-extension): 环境激活、前缀重命名、数据复制与上传进度 
- service.py: _make_env 用 conda run 激活环境（执行 activate.d，补 PYTHONPATH）
- index_ml.html: 环境下拉框动态加载 + 补传 runtime_env
- runtime_binding.py: 前缀误判修复、放宽 ambiguous、can_rename 判断、子目录数据复制补 mkdir
- api.py: 缺输出目录时友好提示
- main.py + lightWeightExtensionTest.js: run.sh 环境声明 # lightweight-env
- index.html/index_ml.html: 拖拽上传进度条

Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
2026-08-19 20:17:43 +08:00
.codegraph
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
.local/meme-4.11.2-mpi
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
.planning
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
.recovery
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
.revision-ppi-kaks-plan-pruning-v1
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
.superpowers
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
.tmp_meme_mpi
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
.tmp_meme_parallel_test_out
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
apps
fix(lightweight-extension): 环境激活、前缀重命名、数据复制与上传进度
2026-08-19 20:17:43 +08:00
assets
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
benchmarks/plantgenebench
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
codeMiaoshu
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
config
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
contrib/methodology-rag-substage-progress
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
docs
多语言散落补全
2026-08-09 12:54:48 +08:00
enviroment
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
extension_code_data_staging/genome_shell_30
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
extension_stages
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
gfa_core
fix(lightweight-extension): 环境激活、前缀重命名、数据复制与上传进度
2026-08-19 20:17:43 +08:00
graphify-out
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
manuscript/plantai_aiia_zh
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
memory
Add memory directory
2026-08-07 09:39:30 +08:00
models/bge-m3_from_web
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
prompts
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
rollback_backups
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
scripts
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
skills
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
test_integration
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
test-results/completed-stage-pruning
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
tests
fix: preserve raw intent across language switching
2026-08-09 16:03:13 +08:00
tools
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
validation/rnaseq_design_20260719
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
w/final
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
.env.example
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
.gitignore
多语言首页与首页引用页
2026-08-09 06:03:39 +08:00
.gitignore.opensource
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
.revision_memory.json
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
.run_ident_enhance.py.swp
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
.tmp_meme_parallel_test.fa
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
=1.0.0,
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
AGENTS.md
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
ANALYSIS_FLOW_ANALYSIS.md
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
At.HD-ZIP.short_names.subfamily.locus.tsv
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
At.HD-ZIP.short_names.subfamily.tsv
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
celery_app.py
feat: 轻量拓展分析 + WGS2GWAS 阶段支持 + 结果区域重构 + 物种角色解析增强 + 会话 Job 隔离
2026-08-05 09:40:45 +08:00
CHANGELOG_2026-04-14.md
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
check_cost.py
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
CLAUDE.md
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
cleanup_agents.sh
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
CONVERSATION_MANAGER_REPORT.md
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
data
chore: 清理旧 data 目录数据文件，新增 data/input/workspace 路径入口
2026-08-05 14:51:04 +08:00
download_prjna530826_rnaseq_aria2c.sh
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
download_prjna530826_rnaseq_aria2c.sh.bak
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
enable_persistent_memory.py
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
example_task_with_wechat.py
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
Ft.SPL.expression.gene-cor.heatmap.pdf
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
Ft.SPL.expression.gene-cor.txt
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
Ft.SPL.expression.gene-exp.heatmap.pdf
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
Ft.SPL.expression.gene-exp.hist.pdf
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
Ft.SPL.expression.gene-exp.txt
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
get_wechat_id.py
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
IDENTIFY_AGENT_FLOW.md
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
input
chore: 清理旧 data 目录数据文件，新增 data/input/workspace 路径入口
2026-08-05 14:51:04 +08:00
input.shared_bbav5_7880_bak_link
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
interproscanpy311.yaml
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
manage_plantai.sh
增加了启动时可以指定web端口的功能；将主页运行结果按钮挪到了拓展分析title的后方
2026-08-06 19:34:11 +08:00
MEMORY.md
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
notify_integration.py
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
OPEN_SOURCE_EXCLUDE.md
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
Os.NAC_promoter_05_upset_data.csv
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
pipeline_backend_patch.py
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
PLAN-REVIEW-LOG.md
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
PLAN.md
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
PRJNA530826.aria2c.urls.txt
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
PRJNA530826.ena_fastq.tsv
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
PRJNA530826.fastq.md5
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
PROJECT_PLAN.md
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
pytest.ini
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
restart_plantai_9000.sh
增加了启动时可以指定web端口的功能；将主页运行结果按钮挪到了拓展分析title的后方
2026-08-06 19:34:11 +08:00
restart_with_prompts.sh
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
REVISION_2026-04-13.md
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
rnaseq.before_salmon_downgrade.txt
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
rnaseq.before_salmon_downgrade.yml
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
run_kaks_manual.sh
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
run_tests.sh
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
SECRET_AUDIT.md
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
session_storage.py
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
start_celery_7880.sh
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
start_celery_9000.sh
1. main.py 指向了新extension_stage_lightweight.api接口
2026-08-05 20:15:29 +08:00
start_celery_port9000.sh
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
start_celery.sh
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
start_plantai_9000.sh
增加了启动时可以指定web端口的功能；将主页运行结果按钮挪到了拓展分析title的后方
2026-08-06 19:34:11 +08:00
start_wechat_bot.sh
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
start_wechat_service.sh
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
start-webui.sh
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
tasks.py
feat: add gene family result reports
2026-08-09 04:32:28 +08:00
test_agent_manual.sh
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
test_annotation_skill.sh
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
test_full_integration.sh
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
test_langgraph_state.py
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
test_rnaseq_align.sh
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
test_router.py
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
test_tree_plot.sh
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
update_prompts.py
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
validate_js.py
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
VUE3_CONVERSATION_SIDEBAR_REPORT.md
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
wechat_bot.py
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
WECHAT_INTEGRATION.md
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
wechat_integration.py
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
wechat_service.py
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
wechat_task_bridge.py
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
WORKLINE.md
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
workspace
chore: 清理旧 data 目录数据文件，新增 data/input/workspace 路径入口
2026-08-05 14:51:04 +08:00
workspace.shared_bbav5_7880_bak_link
Initial commit: PlantAI-dev
2026-08-03 18:42:47 +08:00
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Description
PlantAI-devPlantAI-dev
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20260808展会版
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2026-08-10 17:25:25 +08:00
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