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.revision-ppi-kaks-plan-pruning-v1

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apps

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assets

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benchmarks/plantgenebench

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codeMiaoshu

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config

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contrib/methodology-rag-substage-progress

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docs

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enviroment

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extension_code_data_staging/genome_shell_30

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extension_stages

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gfa_core

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graphify-out

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manuscript/plantai_aiia_zh

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memory

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models/bge-m3_from_web

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prompts

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rollback_backups

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scripts

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services/qa_v1_1_73

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skills

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test_integration

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test-results/completed-stage-pruning

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tests

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tools

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validation/rnaseq_design_20260719

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w/final

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.gitignore

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=1.0.0,

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AGENTS.md

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ANALYSIS_FLOW_ANALYSIS.md

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At.HD-ZIP.short_names.subfamily.locus.tsv

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At.HD-ZIP.short_names.subfamily.tsv

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celery_app.py

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CHANGELOG_2026-04-14.md

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check_cost.py

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CLAUDE.md

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cleanup_agents.sh

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CONVERSATION_MANAGER_REPORT.md

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data

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download_prjna530826_rnaseq_aria2c.sh

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download_prjna530826_rnaseq_aria2c.sh.bak

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enable_persistent_memory.py

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example_task_with_wechat.py

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Ft.SPL.expression.gene-cor.heatmap.pdf

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Ft.SPL.expression.gene-cor.txt

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Ft.SPL.expression.gene-exp.heatmap.pdf

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Ft.SPL.expression.gene-exp.hist.pdf

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Ft.SPL.expression.gene-exp.txt

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get_wechat_id.py

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IDENTIFY_AGENT_FLOW.md

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input

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input.shared_bbav5_7880_bak_link

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interproscanpy311.yaml

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manage_plantai.sh

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MEMORY.md

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notify_integration.py

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OPEN_SOURCE_EXCLUDE.md

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Os.NAC_promoter_05_upset_data.csv

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pipeline_backend_patch.py

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PLAN-REVIEW-LOG.md

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PLAN.md

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PRJNA530826.aria2c.urls.txt

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PRJNA530826.ena_fastq.tsv

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PRJNA530826.fastq.md5

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PROJECT_PLAN.md

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pytest.ini

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restart_plantai_9000.sh

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REVISION_2026-04-13.md

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rnaseq.before_salmon_downgrade.txt

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rnaseq.before_salmon_downgrade.yml

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run_kaks_manual.sh

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run_tests.sh

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SECRET_AUDIT.md

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session_storage.py

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start_celery_9000.sh

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start_plantai_9000.sh

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start_wechat_bot.sh

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start_wechat_service.sh

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tasks.py

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test_agent_manual.sh

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test_annotation_skill.sh

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test_full_integration.sh

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test_langgraph_state.py

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test_rnaseq_align.sh

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test_router.py

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test_tree_plot.sh

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update_prompts.py

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validate_js.py

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VUE3_CONVERSATION_SIDEBAR_REPORT.md

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wechat_bot.py

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WECHAT_INTEGRATION.md

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wechat_integration.py

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wechat_service.py

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wechat_task_bridge.py

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WORKLINE.md

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workspace

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workspace.shared_bbav5_7880_bak_link

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Description

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20260808展会版

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