fix(r4-38): mineru 启动期失败自动重试+中文可读错误+PYTHONUNBUFFERED
缺陷 #38(验收 §4):任务在最早阶段(pipeline 日志出现前)抛出无消息异常,
mineru API 侧 task.error 空串 → CLI 拼出空 message;API 异常日志打向 stdout
被块缓冲,CLI 失败后立即杀 API 进程,真因永久丢失。
修复(agent/methodology 与 agent/legacy-rag 两处同改):
- build_mineru_runtime 的 env 注入 PYTHONUNBUFFERED=1(子进程异常日志即写即落)
- returncode≠0 且 job.log 无 doc_analyze_streaming 行 = 启动期失败 → 自动重试
1 次(stdout 追加同一 job.log,日志留 [retry] 标记,重试块含重复启动命令行)
- 重试仍失败且仍无 pipeline 行 → status failed + 中文可读错误
「提取启动阶段失败(重试后),可能受主机 GPU/显示重配置干扰,请重试」,
附 job.log 原始错误尾部
- 已有 pipeline 行的中途失败不得触发重试,走原错误路径(含 CUDA OOM 中文错误)
测试:agent/{methodology,legacy-rag}/api/test_mineru_retry.py(两树 8 用例):
env 含 PYTHONUNBUFFERED;首败无 pipeline 行 → 重试;重试仍败 → 中文可读错误;
有 pipeline 行失败 → 不重试;json 直投跳过 mineru 段不重试;G6-2 边界。
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
This commit is contained in:
Executable → Regular
+69
-1
@@ -29,7 +29,7 @@ PAPERS_CSV = PROJECT_ROOT / "data" / "evaluation" / "methodology_papers.csv"
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GOLD_CSV = PROJECT_ROOT / "data" / "evaluation" / "methodology_gold.csv"
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REVIEW_RESULTS_JSON = BATCH_DIR / "review_results.json"
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REVIEW_RESULTS_CSV = BATCH_DIR / "review_results.csv"
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# 2026-08-31 新工程适配:上传目录/产出根支持 env 覆盖
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# 2026-08-31 新工程适配:上传目录/产出根支持 env 覆盖(数据根迁移时无需改代码)
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UPLOAD_JOBS_DIR = Path(os.environ.get("METHODOLOGY_UPLOAD_JOBS_DIR", PROJECT_ROOT / "data" / "evaluation" / "methodology_upload_jobs"))
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UPLOAD_OUTPUT_ROOT = Path(os.environ.get("METHODOLOGY_UPLOAD_OUTPUT_ROOT", PROJECT_ROOT / "data" / "evaluation" / "0505"))
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DEFAULT_MINERU_CMD = str(conda_env_path("minerupy312") / "bin" / "mineru")
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@@ -351,6 +351,22 @@ def mineru_gpu_preflight_error(
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)
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# 缺陷 #38(2026-09-11):成功任务的 job.log 必然有 doc_analyze_streaming 行(176 实测)。
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# returncode≠0 且日志中无此行 = 启动期失败(pipeline 起来前就死了,真因被块缓冲吞掉)。
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# 判定条件(methodology 与 legacy-rag 两处 build_mineru_runtime/run_uploaded_methodology_job 同改)
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MINERU_PIPELINE_LOG_MARKER = "doc_analyze_streaming"
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MINERU_STARTUP_RETRIES = 1
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def job_log_has_pipeline_line(log_path: Path) -> bool:
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"""job.log 是否已出现 pipeline 日志行(def _job_log_has_pipeline_line)。"""
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try:
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text = log_path.read_text(encoding="utf-8", errors="replace")
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except OSError:
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return False
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return MINERU_PIPELINE_LOG_MARKER in text
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def summarize_mineru_failure(log_path: Path, returncode: int) -> str:
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message = f"MinerU failed with exit code {returncode}; see {log_path}"
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if not log_path.exists():
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@@ -368,6 +384,28 @@ def summarize_mineru_failure(log_path: Path, returncode: int) -> str:
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return message
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def summarize_mineru_startup_failure(log_path: Path, returncode: int, retried: bool) -> str:
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"""启动期失败(无 pipeline 行)的中文可读错误(缺陷 #38)。
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附上 job.log 中可见的原始错误尾部,让用户能看到真因(修复前真因
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被 stdout 块缓冲 + CLI 立即杀 API 进程永久丢失)。
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"""
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tail = ""
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try:
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text = log_path.read_text(encoding="utf-8", errors="replace")
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lines = [ln for ln in text.splitlines() if ln.strip()]
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if lines:
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tail = " | ".join(ln.strip() for ln in lines[-3:])[:500]
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except OSError:
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tail = ""
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detail = f"原始日志尾部:{tail}" if tail else f"原始错误见日志:{log_path}"
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action = "重试后" if retried else ""
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return (
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f"提取启动阶段失败{action},可能受主机 GPU/显示重配置干扰,请重试"
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f"(MinerU 退出码 {returncode};{detail})。"
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)
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def build_mineru_runtime() -> tuple[list[str], dict[str, str], dict[str, str]]:
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env = os.environ.copy()
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env.setdefault("MINERU_MODEL_SOURCE", "modelscope")
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@@ -384,6 +422,9 @@ def build_mineru_runtime() -> tuple[list[str], dict[str, str], dict[str, str]]:
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else:
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env.setdefault("CUDA_VISIBLE_DEVICES", "0")
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env.setdefault("TORCH_CUDNN_V8_API_DISABLED", "1")
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# 缺陷 #38(2026-09-11):子进程 API 的异常日志即写即落(不再被 stdout
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# 块缓冲吞掉)——CLI 失败后立即杀 API 进程前真因已落到 job.log。
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env["PYTHONUNBUFFERED"] = "1"
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# mineru 3.1.13 CLI 陷阱(部署 agent 实测):带 MINERU_API_SHUTDOWN_ON_STDIN_EOF=1
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# 时,stdin EOF 会让 API 进程静默 shutdown——subprocess 调用必须 stdin=DEVNULL
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env.setdefault("MINERU_API_SHUTDOWN_ON_STDIN_EOF", "0")
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@@ -566,7 +607,34 @@ def run_uploaded_methodology_job(
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stdout=handle,
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stderr=subprocess.STDOUT,
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)
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# 缺陷 #38:启动期失败自动重试 1 次——returncode≠0 且 job.log 无
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# doc_analyze_streaming 行 = pipeline 起来前就失败(真因曾因块缓冲
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# 丢失)。重试的 stdout 继续 append 到同一 job.log,日志/状态留
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# retry 标记(G6-2:已有 pipeline 行的中途失败不得触发重试)。
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startup_retried = False
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if result.returncode != 0 and not job_log_has_pipeline_line(log_path):
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startup_retried = True
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with log_path.open("a", encoding="utf-8") as handle:
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handle.write(
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f"[retry] MinerU 启动期失败(exit {result.returncode},"
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"无 pipeline 阶段日志),自动重试 1/1\n"
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)
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handle.write("$ " + " ".join(cmd) + "\n")
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handle.flush()
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result = subprocess.run(
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cmd,
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cwd=PROJECT_ROOT,
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env=mineru_env,
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text=True,
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stdin=subprocess.DEVNULL,
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stdout=handle,
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stderr=subprocess.STDOUT,
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)
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if result.returncode != 0:
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if not job_log_has_pipeline_line(log_path):
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raise RuntimeError(
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summarize_mineru_startup_failure(log_path, result.returncode, retried=startup_retried)
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)
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raise RuntimeError(summarize_mineru_failure(log_path, result.returncode))
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matches = sorted(mineru_out.rglob("*_content_list.json"))
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if not matches:
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@@ -0,0 +1,328 @@
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"""test_mineru_retry.py —— MinerU 启动期失败重试与可读错误(缺陷 #38,验收 §4 + 回归 G6)。
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运行(worktree 根目录,无需部署、不触服务):
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/home/xzq/5090/teamWorkspace/zh/plantai-rag-new-venv/bin/python -m pytest agent/methodology/api/test_mineru_retry.py -v
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/home/xzq/5090/teamWorkspace/zh/plantai-rag-new-venv/bin/python -m pytest agent/legacy-rag/api/test_mineru_retry.py -v
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说明:agent/methodology 与 agent/legacy-rag 共用同一份 routes(文件名同、内容同),
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同一测试文件复制两处、两处同跑(各用各树的 src/)。
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断言:
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1. build_mineru_runtime 返回 env 含 PYTHONUNBUFFERED=1;
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2. subprocess.run 首次失败 + job.log 无 pipeline 行 → 自动重试 1 次
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(两次启动行、job.log 有 [retry] 标记,第二次 stdout 追加同一 job.log);
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3. 重试仍失败 → status failed + 中文可读「提取启动阶段失败」+ 原始错误尾部;
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4. 已有 pipeline 行的中途失败 → 不重试,走原错误路径(含 CUDA OOM 中文错误)。
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"""
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from __future__ import annotations
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import json
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import subprocess
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from dataclasses import dataclass, field
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from pathlib import Path
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import pytest
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import api.methodology_routes as mr
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from api.methodology_routes import (
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MINERU_PIPELINE_LOG_MARKER,
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build_mineru_runtime,
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job_log_has_pipeline_line,
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run_uploaded_methodology_job,
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summarize_mineru_startup_failure,
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)
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# ---------------------------------------------------------------------------
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# 固定夹具
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# ---------------------------------------------------------------------------
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@dataclass
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class FakeResult:
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returncode: int
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@dataclass
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class RunnerRecorder:
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"""按调用顺序返回预设 returncode;每次调用把 stdout 写进所给 handle(模拟子进程日志)。"""
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sequence: list
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calls: list = field(default_factory=list)
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def run(self, cmd, **kwargs):
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n = len(self.calls)
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self.calls.append({"cmd": cmd, "kwargs": kwargs})
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rc = int(self.sequence[min(n, len(self.sequence) - 1)])
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handle = kwargs.get("stdout")
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if handle is not None and kwargs.get("text"):
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handle.write(f"[fake stdout call#{n}] rc={rc}\n")
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handle.flush()
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return FakeResult(returncode=rc)
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@pytest.fixture
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def fake_success(monkeypatch):
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"""LLM 批次与 bbav5 配置阶段全部假成功(不触真实脚本/目录/真实函数)。
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- gf_python_path / _preflight_executable 桩掉(不依赖真实 python 路径)
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- build_bbav5_methodology_config 桩掉(不要求真实批次产物目录)
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- figure_table 阶段走 routes 内部 try/except,不阻断
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"""
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captured = {}
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def fake_batch(cmd, **kwargs):
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captured["batch_cmd"] = cmd
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return FakeResult(returncode=0)
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monkeypatch.setattr(mr, "gf_python_path", lambda: Path("/usr/bin/python3"))
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monkeypatch.setattr(mr, "_preflight_executable", lambda cmd, hint, name: None)
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monkeypatch.setattr(mr.subprocess, "run", fake_batch)
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monkeypatch.setattr(
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mr,
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"build_bbav5_methodology_config",
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lambda output_dir: captured.setdefault("config", {}),
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)
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return captured
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@pytest.fixture
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def job_root(monkeypatch, tmp_path):
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"""把 UPLOAD_JOBS_DIR 重定向到 tmp(绝不写真实数据目录)。"""
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root = tmp_path / "upload_jobs"
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monkeypatch.setattr(mr, "UPLOAD_JOBS_DIR", root)
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return root
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def read_status(job_dir: Path) -> dict:
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return json.loads((job_dir / "status.json").read_text(encoding="utf-8"))
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def run_job(monkeypatch, tmp_path, runner: RunnerRecorder, source_path: Path, fake_success, job_root):
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"""以 runner 重绑 subprocess.run 跑完整任务流(fake_success 保证后续阶段假成功)。
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注意:fake_success 已把 mr.subprocess.run 桩为假批次;这里再次 setattr
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为 runner(同一模块对象),此后所有子进程调用(mineru 两次 + LLM 批次)
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都由 runner 按 sequence 依次应答——测试 sequence 需覆盖全部调用。
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"""
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job_dir = job_root / "testjob"
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# 模拟 mineru 成功产出:在 job/mineru 下伪造 *_content_list.json
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# (测试不真正执行 mineru)
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(job_dir / "mineru").mkdir(parents=True, exist_ok=True)
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(job_dir / "mineru" / "fake_content_list.json").write_text("{}", encoding="utf-8")
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# GPU 预检禁用(否则 nvidia-smi 会消耗 runner 的 sequence 槽位)
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monkeypatch.setenv("METHODOLOGY_MINERU_GPU_PREFLIGHT", "0")
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monkeypatch.setattr(subprocess, "run", runner.run)
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run_uploaded_methodology_job(
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job_id="testjob",
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source_path=source_path,
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paper_id="paper1",
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family="",
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output_dir=tmp_path / "out",
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llm_model="deepseek-v4-flash",
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llm_request_timeout=75,
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sandbox=False,
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sandbox_run_id="",
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)
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return job_dir
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@pytest.fixture
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def pdf_source(tmp_path):
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src = tmp_path / "sample.pdf"
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src.write_bytes(b"%PDF-1.4\nfake pdf bytes for startup-failure test\n")
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return src
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@pytest.fixture
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def json_source(tmp_path):
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src = tmp_path / "sample.json"
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src.write_text("{}", encoding="utf-8")
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return src
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# ---------------------------------------------------------------------------
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# 修复点 1:env 注入 PYTHONUNBUFFERED
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# ---------------------------------------------------------------------------
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def test_build_mineru_runtime_env_unbuffered(monkeypatch):
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monkeypatch.delenv("MINERU_CMD", raising=False)
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cmd, env, runtime = build_mineru_runtime()
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assert env.get("PYTHONUNBUFFERED") == "1"
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assert cmd # 默认 MINERU_CMD 路径(不要求存在,build 阶段不校验)
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# ---------------------------------------------------------------------------
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# 修复点 2:启动期失败自动重试 1 次
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# ---------------------------------------------------------------------------
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def test_startup_failure_retries_once(monkeypatch, tmp_path, pdf_source, fake_success, job_root):
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runner = RunnerRecorder(sequence=[1, 0, 0]) # mineru 首调失败 → 重试成功 → LLM 批次成功
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job_dir = run_job(monkeypatch, tmp_path, runner, pdf_source, fake_success, job_root)
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log_text = (job_dir / "job.log").read_text(encoding="utf-8")
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startup_lines = [ln for ln in log_text.splitlines() if ln.startswith("$ ")]
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assert len(startup_lines) >= 2, f"应出现两次 mineru 启动(1 次自动重试),实际:{startup_lines}"
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assert "[retry]" in log_text, "job.log 应有可识别重试标记"
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# 第二次 subprocess.run 的 stdout 追加到同一 job.log
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assert "[fake stdout call#0]" in log_text
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assert "[fake stdout call#1]" in log_text
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status = read_status(job_dir)
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assert status.get("status") == "completed"
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def test_startup_failure_retry_then_fail_readable_error(monkeypatch, tmp_path, pdf_source, fake_success, job_root):
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runner = RunnerRecorder(sequence=[1, 1]) # 两次都失败,且无 pipeline 行
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job_dir = run_job(monkeypatch, tmp_path, runner, pdf_source, fake_success, job_root)
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log_text = (job_dir / "job.log").read_text(encoding="utf-8")
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assert len([ln for ln in log_text.splitlines() if ln.startswith("$ /")]) == 2 # 两次 mineru 启动
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assert "[retry]" in log_text
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# pipeline 判定:仅检查子进程输出行(启动命令行本身含 marker 关键字)
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stdout_lines = [ln for ln in log_text.splitlines() if "[fake stdout" in ln or ln.startswith("[retry]")]
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assert MINERU_PIPELINE_LOG_MARKER not in "\n".join(stdout_lines)
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status = read_status(job_dir)
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assert status.get("status") == "failed"
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message = str(status.get("message") or "")
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assert "提取启动阶段失败" in message, f"中文可读错误缺失:{message}"
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assert "退出码" in message and "1" in message
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assert "原始日志尾部" in message or "原始错误见日志" in message
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assert message # 非空
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def test_startup_failure_with_marker_retries_once_then_no_second_retry(monkeypatch, tmp_path, pdf_source, job_root):
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"""G6-2 边界:第一次失败无 marker → 触发重试;重试后才有 marker 但 rc≠0 →
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不二次重试,走 summarize_mineru_failure(有 marker 的中途失败路径)。"""
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sequence = [1, 1]
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calls = []
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def run_with_marker(cmd, **kwargs):
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n = len(calls)
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rc = int(sequence[min(n, len(sequence) - 1)])
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calls.append({"cmd": cmd, "kwargs": kwargs})
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handle = kwargs.get("stdout")
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if handle is not None and kwargs.get("text"):
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if n == 1: # 第二次调用(重试)时写入 pipeline 行
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handle.write(f"[fake] {MINERU_PIPELINE_LOG_MARKER} started\n")
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handle.write(f"[fake stdout call#{n}] rc={rc}\n")
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handle.flush()
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return FakeResult(returncode=rc)
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|
||||
monkeypatch.setenv("METHODOLOGY_MINERU_GPU_PREFLIGHT", "0")
|
||||
monkeypatch.setattr(subprocess, "run", run_with_marker)
|
||||
monkeypatch.setattr(mr, "_preflight_executable", lambda cmd, hint, name: None)
|
||||
monkeypatch.setattr(
|
||||
mr,
|
||||
"summarize_mineru_failure",
|
||||
lambda log_path, rc: f"CUDA out of memory fake path rc={rc}",
|
||||
)
|
||||
job_dir = job_root / "testjob"
|
||||
run_uploaded_methodology_job(
|
||||
job_id="testjob",
|
||||
source_path=pdf_source,
|
||||
paper_id="paper1",
|
||||
family="",
|
||||
output_dir=tmp_path / "out",
|
||||
llm_model="deepseek-v4-flash",
|
||||
llm_request_timeout=75,
|
||||
sandbox=False,
|
||||
sandbox_run_id="",
|
||||
)
|
||||
log_text = (job_dir / "job.log").read_text(encoding="utf-8")
|
||||
assert MINERU_PIPELINE_LOG_MARKER in log_text
|
||||
assert log_text.count("[retry]") == 1, "有 pipeline 行后不得再次重试"
|
||||
# 中途失败(有 marker)→ 原错误路径(CUDA 中文错误)
|
||||
status = read_status(job_dir)
|
||||
assert status.get("status") == "failed"
|
||||
assert "CUDA" in str(status.get("message") or "")
|
||||
|
||||
|
||||
# ---------------------------------------------------------------------------
|
||||
# 修复点 4:有 pipeline 行的中途失败不重试
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
def test_mid_failure_with_pipeline_line_no_retry(monkeypatch, tmp_path, pdf_source, job_root):
|
||||
sequence = [1]
|
||||
calls = []
|
||||
|
||||
def run_with_marker(cmd, **kwargs):
|
||||
n = len(calls)
|
||||
rc = int(sequence[min(n, len(sequence) - 1)])
|
||||
calls.append({"cmd": cmd, "kwargs": kwargs})
|
||||
handle = kwargs.get("stdout")
|
||||
if handle is not None and kwargs.get("text"):
|
||||
if n == 0: # 第一次调用即写 pipeline 行
|
||||
handle.write(f"[fake] {MINERU_PIPELINE_LOG_MARKER} started\n")
|
||||
handle.write(f"[fake stdout call#{n}] rc={rc}\n")
|
||||
handle.flush()
|
||||
return FakeResult(returncode=rc)
|
||||
|
||||
monkeypatch.setenv("METHODOLOGY_MINERU_GPU_PREFLIGHT", "0")
|
||||
monkeypatch.setattr(subprocess, "run", run_with_marker)
|
||||
monkeypatch.setattr(mr, "_preflight_executable", lambda cmd, hint, name: None)
|
||||
monkeypatch.setattr(
|
||||
mr,
|
||||
"summarize_mineru_failure",
|
||||
lambda log_path, rc: f"CUDA out of memory fake path rc={rc}",
|
||||
)
|
||||
job_dir = job_root / "testjob"
|
||||
run_uploaded_methodology_job(
|
||||
job_id="testjob",
|
||||
source_path=pdf_source,
|
||||
paper_id="paper1",
|
||||
family="",
|
||||
output_dir=tmp_path / "out",
|
||||
llm_model="deepseek-v4-flash",
|
||||
llm_request_timeout=75,
|
||||
sandbox=False,
|
||||
sandbox_run_id="",
|
||||
)
|
||||
log_text = (job_dir / "job.log").read_text(encoding="utf-8")
|
||||
assert MINERU_PIPELINE_LOG_MARKER in log_text
|
||||
assert "[retry]" not in log_text, "已有 pipeline 行的中途失败不得触发重试"
|
||||
# 原始启动块 = 1 条 `$ env ...` + 1 条 `$ <cmd>`;无重试追加
|
||||
assert len([ln for ln in log_text.splitlines() if ln.startswith("$ /")]) == 1
|
||||
status = read_status(job_dir)
|
||||
assert status.get("status") == "failed"
|
||||
assert "CUDA" in str(status.get("message") or "")
|
||||
|
||||
|
||||
# ---------------------------------------------------------------------------
|
||||
# JSON 直接投递(跳过 mineru 段)不重试、不破坏状态机
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
def test_json_source_skips_mineru_no_retry(monkeypatch, tmp_path, json_source, fake_success, job_root):
|
||||
runner = RunnerRecorder(sequence=[0]) # 仅 LLM 批次一次
|
||||
job_dir = run_job(monkeypatch, tmp_path, runner, json_source, fake_success, job_root)
|
||||
log_text = (job_dir / "job.log").read_text(encoding="utf-8")
|
||||
assert "[retry]" not in log_text
|
||||
assert MINERU_PIPELINE_LOG_MARKER not in log_text
|
||||
status = read_status(job_dir)
|
||||
assert status.get("status") == "completed"
|
||||
|
||||
|
||||
# ---------------------------------------------------------------------------
|
||||
# 工具函数单元
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
def test_job_log_has_pipeline_line(tmp_path):
|
||||
log_path = tmp_path / "job.log"
|
||||
assert job_log_has_pipeline_line(log_path) is False
|
||||
log_path.write_text("noise\n", encoding="utf-8")
|
||||
assert job_log_has_pipeline_line(log_path) is False
|
||||
log_path.write_text(f"2026-09-11 [INFO] {MINERU_PIPELINE_LOG_MARKER} begin\n", encoding="utf-8")
|
||||
assert job_log_has_pipeline_line(log_path) is True
|
||||
|
||||
|
||||
def test_summarize_startup_failure_readable(tmp_path):
|
||||
log_path = tmp_path / "job.log"
|
||||
log_path.write_text("line one\nline two\nTraceback: boom\n", encoding="utf-8")
|
||||
msg = summarize_mineru_startup_failure(log_path, 1, retried=True)
|
||||
assert "提取启动阶段失败" in msg
|
||||
assert "重试后" in msg
|
||||
assert "退出码 1" in msg
|
||||
assert "Traceback: boom" in msg
|
||||
missing = summarize_mineru_startup_failure(tmp_path / "nope.log", 1, retried=False)
|
||||
assert "提取启动阶段失败" in missing
|
||||
assert "重试后" not in missing
|
||||
Executable → Regular
+68
@@ -351,6 +351,22 @@ def mineru_gpu_preflight_error(
|
||||
)
|
||||
|
||||
|
||||
# 缺陷 #38(2026-09-11):成功任务的 job.log 必然有 doc_analyze_streaming 行(176 实测)。
|
||||
# returncode≠0 且日志中无此行 = 启动期失败(pipeline 起来前就死了,真因被块缓冲吞掉)。
|
||||
# 判定条件(methodology 与 legacy-rag 两处 build_mineru_runtime/run_uploaded_methodology_job 同改)
|
||||
MINERU_PIPELINE_LOG_MARKER = "doc_analyze_streaming"
|
||||
MINERU_STARTUP_RETRIES = 1
|
||||
|
||||
|
||||
def job_log_has_pipeline_line(log_path: Path) -> bool:
|
||||
"""job.log 是否已出现 pipeline 日志行(def _job_log_has_pipeline_line)。"""
|
||||
try:
|
||||
text = log_path.read_text(encoding="utf-8", errors="replace")
|
||||
except OSError:
|
||||
return False
|
||||
return MINERU_PIPELINE_LOG_MARKER in text
|
||||
|
||||
|
||||
def summarize_mineru_failure(log_path: Path, returncode: int) -> str:
|
||||
message = f"MinerU failed with exit code {returncode}; see {log_path}"
|
||||
if not log_path.exists():
|
||||
@@ -368,6 +384,28 @@ def summarize_mineru_failure(log_path: Path, returncode: int) -> str:
|
||||
return message
|
||||
|
||||
|
||||
def summarize_mineru_startup_failure(log_path: Path, returncode: int, retried: bool) -> str:
|
||||
"""启动期失败(无 pipeline 行)的中文可读错误(缺陷 #38)。
|
||||
|
||||
附上 job.log 中可见的原始错误尾部,让用户能看到真因(修复前真因
|
||||
被 stdout 块缓冲 + CLI 立即杀 API 进程永久丢失)。
|
||||
"""
|
||||
tail = ""
|
||||
try:
|
||||
text = log_path.read_text(encoding="utf-8", errors="replace")
|
||||
lines = [ln for ln in text.splitlines() if ln.strip()]
|
||||
if lines:
|
||||
tail = " | ".join(ln.strip() for ln in lines[-3:])[:500]
|
||||
except OSError:
|
||||
tail = ""
|
||||
detail = f"原始日志尾部:{tail}" if tail else f"原始错误见日志:{log_path}"
|
||||
action = "重试后" if retried else ""
|
||||
return (
|
||||
f"提取启动阶段失败{action},可能受主机 GPU/显示重配置干扰,请重试"
|
||||
f"(MinerU 退出码 {returncode};{detail})。"
|
||||
)
|
||||
|
||||
|
||||
def build_mineru_runtime() -> tuple[list[str], dict[str, str], dict[str, str]]:
|
||||
env = os.environ.copy()
|
||||
env.setdefault("MINERU_MODEL_SOURCE", "modelscope")
|
||||
@@ -384,6 +422,9 @@ def build_mineru_runtime() -> tuple[list[str], dict[str, str], dict[str, str]]:
|
||||
else:
|
||||
env.setdefault("CUDA_VISIBLE_DEVICES", "0")
|
||||
env.setdefault("TORCH_CUDNN_V8_API_DISABLED", "1")
|
||||
# 缺陷 #38(2026-09-11):子进程 API 的异常日志即写即落(不再被 stdout
|
||||
# 块缓冲吞掉)——CLI 失败后立即杀 API 进程前真因已落到 job.log。
|
||||
env["PYTHONUNBUFFERED"] = "1"
|
||||
# mineru 3.1.13 CLI 陷阱(部署 agent 实测):带 MINERU_API_SHUTDOWN_ON_STDIN_EOF=1
|
||||
# 时,stdin EOF 会让 API 进程静默 shutdown——subprocess 调用必须 stdin=DEVNULL
|
||||
env.setdefault("MINERU_API_SHUTDOWN_ON_STDIN_EOF", "0")
|
||||
@@ -566,7 +607,34 @@ def run_uploaded_methodology_job(
|
||||
stdout=handle,
|
||||
stderr=subprocess.STDOUT,
|
||||
)
|
||||
# 缺陷 #38:启动期失败自动重试 1 次——returncode≠0 且 job.log 无
|
||||
# doc_analyze_streaming 行 = pipeline 起来前就失败(真因曾因块缓冲
|
||||
# 丢失)。重试的 stdout 继续 append 到同一 job.log,日志/状态留
|
||||
# retry 标记(G6-2:已有 pipeline 行的中途失败不得触发重试)。
|
||||
startup_retried = False
|
||||
if result.returncode != 0 and not job_log_has_pipeline_line(log_path):
|
||||
startup_retried = True
|
||||
with log_path.open("a", encoding="utf-8") as handle:
|
||||
handle.write(
|
||||
f"[retry] MinerU 启动期失败(exit {result.returncode},"
|
||||
"无 pipeline 阶段日志),自动重试 1/1\n"
|
||||
)
|
||||
handle.write("$ " + " ".join(cmd) + "\n")
|
||||
handle.flush()
|
||||
result = subprocess.run(
|
||||
cmd,
|
||||
cwd=PROJECT_ROOT,
|
||||
env=mineru_env,
|
||||
text=True,
|
||||
stdin=subprocess.DEVNULL,
|
||||
stdout=handle,
|
||||
stderr=subprocess.STDOUT,
|
||||
)
|
||||
if result.returncode != 0:
|
||||
if not job_log_has_pipeline_line(log_path):
|
||||
raise RuntimeError(
|
||||
summarize_mineru_startup_failure(log_path, result.returncode, retried=startup_retried)
|
||||
)
|
||||
raise RuntimeError(summarize_mineru_failure(log_path, result.returncode))
|
||||
matches = sorted(mineru_out.rglob("*_content_list.json"))
|
||||
if not matches:
|
||||
|
||||
@@ -0,0 +1,328 @@
|
||||
"""test_mineru_retry.py —— MinerU 启动期失败重试与可读错误(缺陷 #38,验收 §4 + 回归 G6)。
|
||||
|
||||
运行(worktree 根目录,无需部署、不触服务):
|
||||
/home/xzq/5090/teamWorkspace/zh/plantai-rag-new-venv/bin/python -m pytest agent/methodology/api/test_mineru_retry.py -v
|
||||
/home/xzq/5090/teamWorkspace/zh/plantai-rag-new-venv/bin/python -m pytest agent/legacy-rag/api/test_mineru_retry.py -v
|
||||
说明:agent/methodology 与 agent/legacy-rag 共用同一份 routes(文件名同、内容同),
|
||||
同一测试文件复制两处、两处同跑(各用各树的 src/)。
|
||||
|
||||
断言:
|
||||
1. build_mineru_runtime 返回 env 含 PYTHONUNBUFFERED=1;
|
||||
2. subprocess.run 首次失败 + job.log 无 pipeline 行 → 自动重试 1 次
|
||||
(两次启动行、job.log 有 [retry] 标记,第二次 stdout 追加同一 job.log);
|
||||
3. 重试仍失败 → status failed + 中文可读「提取启动阶段失败」+ 原始错误尾部;
|
||||
4. 已有 pipeline 行的中途失败 → 不重试,走原错误路径(含 CUDA OOM 中文错误)。
|
||||
"""
|
||||
from __future__ import annotations
|
||||
|
||||
import json
|
||||
import subprocess
|
||||
from dataclasses import dataclass, field
|
||||
from pathlib import Path
|
||||
|
||||
import pytest
|
||||
|
||||
import api.methodology_routes as mr
|
||||
|
||||
from api.methodology_routes import (
|
||||
MINERU_PIPELINE_LOG_MARKER,
|
||||
build_mineru_runtime,
|
||||
job_log_has_pipeline_line,
|
||||
run_uploaded_methodology_job,
|
||||
summarize_mineru_startup_failure,
|
||||
)
|
||||
|
||||
|
||||
# ---------------------------------------------------------------------------
|
||||
# 固定夹具
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
@dataclass
|
||||
class FakeResult:
|
||||
returncode: int
|
||||
|
||||
|
||||
@dataclass
|
||||
class RunnerRecorder:
|
||||
"""按调用顺序返回预设 returncode;每次调用把 stdout 写进所给 handle(模拟子进程日志)。"""
|
||||
|
||||
sequence: list
|
||||
calls: list = field(default_factory=list)
|
||||
|
||||
def run(self, cmd, **kwargs):
|
||||
n = len(self.calls)
|
||||
self.calls.append({"cmd": cmd, "kwargs": kwargs})
|
||||
rc = int(self.sequence[min(n, len(self.sequence) - 1)])
|
||||
handle = kwargs.get("stdout")
|
||||
if handle is not None and kwargs.get("text"):
|
||||
handle.write(f"[fake stdout call#{n}] rc={rc}\n")
|
||||
handle.flush()
|
||||
return FakeResult(returncode=rc)
|
||||
|
||||
|
||||
@pytest.fixture
|
||||
def fake_success(monkeypatch):
|
||||
"""LLM 批次与 bbav5 配置阶段全部假成功(不触真实脚本/目录/真实函数)。
|
||||
|
||||
- gf_python_path / _preflight_executable 桩掉(不依赖真实 python 路径)
|
||||
- build_bbav5_methodology_config 桩掉(不要求真实批次产物目录)
|
||||
- figure_table 阶段走 routes 内部 try/except,不阻断
|
||||
"""
|
||||
captured = {}
|
||||
|
||||
def fake_batch(cmd, **kwargs):
|
||||
captured["batch_cmd"] = cmd
|
||||
return FakeResult(returncode=0)
|
||||
|
||||
monkeypatch.setattr(mr, "gf_python_path", lambda: Path("/usr/bin/python3"))
|
||||
monkeypatch.setattr(mr, "_preflight_executable", lambda cmd, hint, name: None)
|
||||
monkeypatch.setattr(mr.subprocess, "run", fake_batch)
|
||||
monkeypatch.setattr(
|
||||
mr,
|
||||
"build_bbav5_methodology_config",
|
||||
lambda output_dir: captured.setdefault("config", {}),
|
||||
)
|
||||
return captured
|
||||
|
||||
|
||||
@pytest.fixture
|
||||
def job_root(monkeypatch, tmp_path):
|
||||
"""把 UPLOAD_JOBS_DIR 重定向到 tmp(绝不写真实数据目录)。"""
|
||||
root = tmp_path / "upload_jobs"
|
||||
monkeypatch.setattr(mr, "UPLOAD_JOBS_DIR", root)
|
||||
return root
|
||||
|
||||
|
||||
def read_status(job_dir: Path) -> dict:
|
||||
return json.loads((job_dir / "status.json").read_text(encoding="utf-8"))
|
||||
|
||||
|
||||
def run_job(monkeypatch, tmp_path, runner: RunnerRecorder, source_path: Path, fake_success, job_root):
|
||||
"""以 runner 重绑 subprocess.run 跑完整任务流(fake_success 保证后续阶段假成功)。
|
||||
|
||||
注意:fake_success 已把 mr.subprocess.run 桩为假批次;这里再次 setattr
|
||||
为 runner(同一模块对象),此后所有子进程调用(mineru 两次 + LLM 批次)
|
||||
都由 runner 按 sequence 依次应答——测试 sequence 需覆盖全部调用。
|
||||
"""
|
||||
job_dir = job_root / "testjob"
|
||||
# 模拟 mineru 成功产出:在 job/mineru 下伪造 *_content_list.json
|
||||
# (测试不真正执行 mineru)
|
||||
(job_dir / "mineru").mkdir(parents=True, exist_ok=True)
|
||||
(job_dir / "mineru" / "fake_content_list.json").write_text("{}", encoding="utf-8")
|
||||
# GPU 预检禁用(否则 nvidia-smi 会消耗 runner 的 sequence 槽位)
|
||||
monkeypatch.setenv("METHODOLOGY_MINERU_GPU_PREFLIGHT", "0")
|
||||
monkeypatch.setattr(subprocess, "run", runner.run)
|
||||
run_uploaded_methodology_job(
|
||||
job_id="testjob",
|
||||
source_path=source_path,
|
||||
paper_id="paper1",
|
||||
family="",
|
||||
output_dir=tmp_path / "out",
|
||||
llm_model="deepseek-v4-flash",
|
||||
llm_request_timeout=75,
|
||||
sandbox=False,
|
||||
sandbox_run_id="",
|
||||
)
|
||||
return job_dir
|
||||
|
||||
|
||||
@pytest.fixture
|
||||
def pdf_source(tmp_path):
|
||||
src = tmp_path / "sample.pdf"
|
||||
src.write_bytes(b"%PDF-1.4\nfake pdf bytes for startup-failure test\n")
|
||||
return src
|
||||
|
||||
|
||||
@pytest.fixture
|
||||
def json_source(tmp_path):
|
||||
src = tmp_path / "sample.json"
|
||||
src.write_text("{}", encoding="utf-8")
|
||||
return src
|
||||
|
||||
|
||||
# ---------------------------------------------------------------------------
|
||||
# 修复点 1:env 注入 PYTHONUNBUFFERED
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
def test_build_mineru_runtime_env_unbuffered(monkeypatch):
|
||||
monkeypatch.delenv("MINERU_CMD", raising=False)
|
||||
cmd, env, runtime = build_mineru_runtime()
|
||||
assert env.get("PYTHONUNBUFFERED") == "1"
|
||||
assert cmd # 默认 MINERU_CMD 路径(不要求存在,build 阶段不校验)
|
||||
|
||||
|
||||
# ---------------------------------------------------------------------------
|
||||
# 修复点 2:启动期失败自动重试 1 次
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
def test_startup_failure_retries_once(monkeypatch, tmp_path, pdf_source, fake_success, job_root):
|
||||
runner = RunnerRecorder(sequence=[1, 0, 0]) # mineru 首调失败 → 重试成功 → LLM 批次成功
|
||||
job_dir = run_job(monkeypatch, tmp_path, runner, pdf_source, fake_success, job_root)
|
||||
|
||||
log_text = (job_dir / "job.log").read_text(encoding="utf-8")
|
||||
startup_lines = [ln for ln in log_text.splitlines() if ln.startswith("$ ")]
|
||||
assert len(startup_lines) >= 2, f"应出现两次 mineru 启动(1 次自动重试),实际:{startup_lines}"
|
||||
assert "[retry]" in log_text, "job.log 应有可识别重试标记"
|
||||
# 第二次 subprocess.run 的 stdout 追加到同一 job.log
|
||||
assert "[fake stdout call#0]" in log_text
|
||||
assert "[fake stdout call#1]" in log_text
|
||||
|
||||
status = read_status(job_dir)
|
||||
assert status.get("status") == "completed"
|
||||
|
||||
|
||||
def test_startup_failure_retry_then_fail_readable_error(monkeypatch, tmp_path, pdf_source, fake_success, job_root):
|
||||
runner = RunnerRecorder(sequence=[1, 1]) # 两次都失败,且无 pipeline 行
|
||||
job_dir = run_job(monkeypatch, tmp_path, runner, pdf_source, fake_success, job_root)
|
||||
|
||||
log_text = (job_dir / "job.log").read_text(encoding="utf-8")
|
||||
assert len([ln for ln in log_text.splitlines() if ln.startswith("$ /")]) == 2 # 两次 mineru 启动
|
||||
assert "[retry]" in log_text
|
||||
# pipeline 判定:仅检查子进程输出行(启动命令行本身含 marker 关键字)
|
||||
stdout_lines = [ln for ln in log_text.splitlines() if "[fake stdout" in ln or ln.startswith("[retry]")]
|
||||
assert MINERU_PIPELINE_LOG_MARKER not in "\n".join(stdout_lines)
|
||||
|
||||
status = read_status(job_dir)
|
||||
assert status.get("status") == "failed"
|
||||
message = str(status.get("message") or "")
|
||||
assert "提取启动阶段失败" in message, f"中文可读错误缺失:{message}"
|
||||
assert "退出码" in message and "1" in message
|
||||
assert "原始日志尾部" in message or "原始错误见日志" in message
|
||||
assert message # 非空
|
||||
|
||||
|
||||
def test_startup_failure_with_marker_retries_once_then_no_second_retry(monkeypatch, tmp_path, pdf_source, job_root):
|
||||
"""G6-2 边界:第一次失败无 marker → 触发重试;重试后才有 marker 但 rc≠0 →
|
||||
不二次重试,走 summarize_mineru_failure(有 marker 的中途失败路径)。"""
|
||||
sequence = [1, 1]
|
||||
calls = []
|
||||
|
||||
def run_with_marker(cmd, **kwargs):
|
||||
n = len(calls)
|
||||
rc = int(sequence[min(n, len(sequence) - 1)])
|
||||
calls.append({"cmd": cmd, "kwargs": kwargs})
|
||||
handle = kwargs.get("stdout")
|
||||
if handle is not None and kwargs.get("text"):
|
||||
if n == 1: # 第二次调用(重试)时写入 pipeline 行
|
||||
handle.write(f"[fake] {MINERU_PIPELINE_LOG_MARKER} started\n")
|
||||
handle.write(f"[fake stdout call#{n}] rc={rc}\n")
|
||||
handle.flush()
|
||||
return FakeResult(returncode=rc)
|
||||
|
||||
monkeypatch.setenv("METHODOLOGY_MINERU_GPU_PREFLIGHT", "0")
|
||||
monkeypatch.setattr(subprocess, "run", run_with_marker)
|
||||
monkeypatch.setattr(mr, "_preflight_executable", lambda cmd, hint, name: None)
|
||||
monkeypatch.setattr(
|
||||
mr,
|
||||
"summarize_mineru_failure",
|
||||
lambda log_path, rc: f"CUDA out of memory fake path rc={rc}",
|
||||
)
|
||||
job_dir = job_root / "testjob"
|
||||
run_uploaded_methodology_job(
|
||||
job_id="testjob",
|
||||
source_path=pdf_source,
|
||||
paper_id="paper1",
|
||||
family="",
|
||||
output_dir=tmp_path / "out",
|
||||
llm_model="deepseek-v4-flash",
|
||||
llm_request_timeout=75,
|
||||
sandbox=False,
|
||||
sandbox_run_id="",
|
||||
)
|
||||
log_text = (job_dir / "job.log").read_text(encoding="utf-8")
|
||||
assert MINERU_PIPELINE_LOG_MARKER in log_text
|
||||
assert log_text.count("[retry]") == 1, "有 pipeline 行后不得再次重试"
|
||||
# 中途失败(有 marker)→ 原错误路径(CUDA 中文错误)
|
||||
status = read_status(job_dir)
|
||||
assert status.get("status") == "failed"
|
||||
assert "CUDA" in str(status.get("message") or "")
|
||||
|
||||
|
||||
# ---------------------------------------------------------------------------
|
||||
# 修复点 4:有 pipeline 行的中途失败不重试
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
def test_mid_failure_with_pipeline_line_no_retry(monkeypatch, tmp_path, pdf_source, job_root):
|
||||
sequence = [1]
|
||||
calls = []
|
||||
|
||||
def run_with_marker(cmd, **kwargs):
|
||||
n = len(calls)
|
||||
rc = int(sequence[min(n, len(sequence) - 1)])
|
||||
calls.append({"cmd": cmd, "kwargs": kwargs})
|
||||
handle = kwargs.get("stdout")
|
||||
if handle is not None and kwargs.get("text"):
|
||||
if n == 0: # 第一次调用即写 pipeline 行
|
||||
handle.write(f"[fake] {MINERU_PIPELINE_LOG_MARKER} started\n")
|
||||
handle.write(f"[fake stdout call#{n}] rc={rc}\n")
|
||||
handle.flush()
|
||||
return FakeResult(returncode=rc)
|
||||
|
||||
monkeypatch.setenv("METHODOLOGY_MINERU_GPU_PREFLIGHT", "0")
|
||||
monkeypatch.setattr(subprocess, "run", run_with_marker)
|
||||
monkeypatch.setattr(mr, "_preflight_executable", lambda cmd, hint, name: None)
|
||||
monkeypatch.setattr(
|
||||
mr,
|
||||
"summarize_mineru_failure",
|
||||
lambda log_path, rc: f"CUDA out of memory fake path rc={rc}",
|
||||
)
|
||||
job_dir = job_root / "testjob"
|
||||
run_uploaded_methodology_job(
|
||||
job_id="testjob",
|
||||
source_path=pdf_source,
|
||||
paper_id="paper1",
|
||||
family="",
|
||||
output_dir=tmp_path / "out",
|
||||
llm_model="deepseek-v4-flash",
|
||||
llm_request_timeout=75,
|
||||
sandbox=False,
|
||||
sandbox_run_id="",
|
||||
)
|
||||
log_text = (job_dir / "job.log").read_text(encoding="utf-8")
|
||||
assert MINERU_PIPELINE_LOG_MARKER in log_text
|
||||
assert "[retry]" not in log_text, "已有 pipeline 行的中途失败不得触发重试"
|
||||
# 原始启动块 = 1 条 `$ env ...` + 1 条 `$ <cmd>`;无重试追加
|
||||
assert len([ln for ln in log_text.splitlines() if ln.startswith("$ /")]) == 1
|
||||
status = read_status(job_dir)
|
||||
assert status.get("status") == "failed"
|
||||
assert "CUDA" in str(status.get("message") or "")
|
||||
|
||||
|
||||
# ---------------------------------------------------------------------------
|
||||
# JSON 直接投递(跳过 mineru 段)不重试、不破坏状态机
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
def test_json_source_skips_mineru_no_retry(monkeypatch, tmp_path, json_source, fake_success, job_root):
|
||||
runner = RunnerRecorder(sequence=[0]) # 仅 LLM 批次一次
|
||||
job_dir = run_job(monkeypatch, tmp_path, runner, json_source, fake_success, job_root)
|
||||
log_text = (job_dir / "job.log").read_text(encoding="utf-8")
|
||||
assert "[retry]" not in log_text
|
||||
assert MINERU_PIPELINE_LOG_MARKER not in log_text
|
||||
status = read_status(job_dir)
|
||||
assert status.get("status") == "completed"
|
||||
|
||||
|
||||
# ---------------------------------------------------------------------------
|
||||
# 工具函数单元
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
def test_job_log_has_pipeline_line(tmp_path):
|
||||
log_path = tmp_path / "job.log"
|
||||
assert job_log_has_pipeline_line(log_path) is False
|
||||
log_path.write_text("noise\n", encoding="utf-8")
|
||||
assert job_log_has_pipeline_line(log_path) is False
|
||||
log_path.write_text(f"2026-09-11 [INFO] {MINERU_PIPELINE_LOG_MARKER} begin\n", encoding="utf-8")
|
||||
assert job_log_has_pipeline_line(log_path) is True
|
||||
|
||||
|
||||
def test_summarize_startup_failure_readable(tmp_path):
|
||||
log_path = tmp_path / "job.log"
|
||||
log_path.write_text("line one\nline two\nTraceback: boom\n", encoding="utf-8")
|
||||
msg = summarize_mineru_startup_failure(log_path, 1, retried=True)
|
||||
assert "提取启动阶段失败" in msg
|
||||
assert "重试后" in msg
|
||||
assert "退出码 1" in msg
|
||||
assert "Traceback: boom" in msg
|
||||
missing = summarize_mineru_startup_failure(tmp_path / "nope.log", 1, retried=False)
|
||||
assert "提取启动阶段失败" in missing
|
||||
assert "重试后" not in missing
|
||||
Reference in New Issue
Block a user