P4 补充:legacy-rag 编译瘦身(排除 v13-v15 系列,源码保留)
- compile.manifest:449 → 267 模块(编译面) - compile.exclude-v13-v15:182 模块(v13/v14/v15/v15_3_1-4,生产 7 月批量 提取管线的历史迭代,运行时不引用;源码全部原样保留在仓库) - compile.manifest.full:449 全量存档(与生产 7900 容器同面,可对照) - 保留集验证:v16_1_1/v16_1_2/methodology/顶层/api/scripts 均不引用被排除系列 (唯一引用者 unified_converter.py 本身是死代码,未入保留集) - 瘦身编译树:283 .so,audit 0 错,7914 冒烟 kg/stats 200(5.9s) - 编译时长:463→283 模块,GCC 阶段约省一半 Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
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jerry
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|
||||
src/rag/extractors/v15_3_3/phase2_supplementary
|
||||
src/rag/extractors/v15_3_3/phase3_entity_recognition
|
||||
src/rag/extractors/v15_3_3/phase4_5_triple_canonicalization
|
||||
src/rag/extractors/v15_3_3/phase4_6_relation_semantic_review
|
||||
src/rag/extractors/v15_3_3/phase4_7_llm2_srt_verifier
|
||||
src/rag/extractors/v15_3_3/phase4_llm_relation_extraction
|
||||
src/rag/extractors/v15_3_3/phase4_llm_relation_extraction_v15_2_1
|
||||
src/rag/extractors/v15_3_3/phase4_relation_extraction
|
||||
src/rag/extractors/v15_3_3/phase5_post_processing
|
||||
src/rag/extractors/v15_3_3/phase5_review
|
||||
src/rag/extractors/v15_3_3/phase6_5_figure_caption
|
||||
src/rag/extractors/v15_3_3/phase6_vlm_image_extraction
|
||||
src/rag/extractors/v15_3_3/relation_block_builder
|
||||
src/rag/extractors/v15_3_3/self_learning
|
||||
src/rag/extractors/v15_3_3/v15_extractor
|
||||
src/rag/extractors/v15_3_3/v15_logger
|
||||
src/rag/extractors/v15_3_4/chunk_builder
|
||||
src/rag/extractors/v15_3_4/chunk_builder_v15_2_1
|
||||
src/rag/extractors/v15_3_4/chunk_builder_v15_2_2
|
||||
src/rag/extractors/v15_3_4/chunk_builder_v15_2_3
|
||||
src/rag/extractors/v15_3_4/chunk_builder_v15_2_4
|
||||
src/rag/extractors/v15_3_4/chunk_builder_v15_2_5
|
||||
src/rag/extractors/v15_3_4/entity_linker
|
||||
src/rag/extractors/v15_3_4/llm_definition_generator
|
||||
src/rag/extractors/v15_3_4/methodology_reviewer
|
||||
src/rag/extractors/v15_3_4/neo4j_store_v15
|
||||
src/rag/extractors/v15_3_4/pc_data_loader
|
||||
src/rag/extractors/v15_3_4/pc_pattern_importer
|
||||
src/rag/extractors/v15_3_4/pc_patterns_loader
|
||||
src/rag/extractors/v15_3_4/phase1_document_parser
|
||||
src/rag/extractors/v15_3_4/phase1_document_parser_mineru
|
||||
src/rag/extractors/v15_3_4/phase2_supplementary
|
||||
src/rag/extractors/v15_3_4/phase3_entity_recognition
|
||||
src/rag/extractors/v15_3_4/phase4_5_triple_canonicalization
|
||||
src/rag/extractors/v15_3_4/phase4_6_relation_semantic_review
|
||||
src/rag/extractors/v15_3_4/phase4_llm_relation_extraction
|
||||
src/rag/extractors/v15_3_4/phase4_llm_relation_extraction_v15_2_1
|
||||
src/rag/extractors/v15_3_4/phase4_relation_extraction
|
||||
src/rag/extractors/v15_3_4/phase5_post_processing
|
||||
src/rag/extractors/v15_3_4/phase5_review
|
||||
src/rag/extractors/v15_3_4/phase6_5_figure_caption
|
||||
src/rag/extractors/v15_3_4/phase6_vlm_image_extraction
|
||||
src/rag/extractors/v15_3_4/relation_block_builder
|
||||
src/rag/extractors/v15_3_4/self_learning
|
||||
src/rag/extractors/v15_3_4/v15_extractor
|
||||
src/rag/extractors/v15_3_4/v15_logger
|
||||
src/rag/extractors/v15/chunk_builder
|
||||
src/rag/extractors/v15/chunk_builder_v15_2_1
|
||||
src/rag/extractors/v15/chunk_builder_v15_2_2
|
||||
src/rag/extractors/v15/chunk_builder_v15_2_3
|
||||
src/rag/extractors/v15/chunk_builder_v15_2_4
|
||||
src/rag/extractors/v15/chunk_builder_v15_2_5
|
||||
src/rag/extractors/v15/entity_linker
|
||||
src/rag/extractors/v15/llm_definition_generator
|
||||
src/rag/extractors/v15/methodology_reviewer
|
||||
src/rag/extractors/v15/neo4j_store_v15
|
||||
src/rag/extractors/v15/pc_data_loader
|
||||
src/rag/extractors/v15/pc_pattern_importer
|
||||
src/rag/extractors/v15/pc_patterns_loader
|
||||
src/rag/extractors/v15/phase1_document_parser
|
||||
src/rag/extractors/v15/phase1_document_parser_mineru
|
||||
src/rag/extractors/v15/phase2_supplementary
|
||||
src/rag/extractors/v15/phase3_entity_recognition
|
||||
src/rag/extractors/v15/phase4_5_triple_canonicalization
|
||||
src/rag/extractors/v15/phase4_6_relation_semantic_review
|
||||
src/rag/extractors/v15/phase4_llm_relation_extraction
|
||||
src/rag/extractors/v15/phase4_llm_relation_extraction_v15_2_1
|
||||
src/rag/extractors/v15/phase4_relation_extraction
|
||||
src/rag/extractors/v15/phase5_post_processing
|
||||
src/rag/extractors/v15/phase5_review
|
||||
src/rag/extractors/v15/phase6_5_figure_caption
|
||||
src/rag/extractors/v15/phase6_vlm_image_extraction
|
||||
src/rag/extractors/v15/relation_block_builder
|
||||
src/rag/extractors/v15/self_learning
|
||||
src/rag/extractors/v15/v15_extractor
|
||||
src/rag/extractors/v15/v15_logger
|
||||
src/rag/extractors/v16_1_1/chunk_builder
|
||||
src/rag/extractors/v16_1_1/chunk_builder_v15_2_1
|
||||
src/rag/extractors/v16_1_1/chunk_builder_v15_2_2
|
||||
src/rag/extractors/v16_1_1/chunk_builder_v15_2_3
|
||||
src/rag/extractors/v16_1_1/chunk_builder_v15_2_4
|
||||
src/rag/extractors/v16_1_1/chunk_builder_v15_2_5
|
||||
src/rag/extractors/v16_1_1/entity_linker
|
||||
src/rag/extractors/v16_1_1/entity_validator_v16_1_1
|
||||
src/rag/extractors/v16_1_1/llm_definition_generator
|
||||
src/rag/extractors/v16_1_1/methodology_reviewer
|
||||
src/rag/extractors/v16_1_1/neo4j_store_v15
|
||||
src/rag/extractors/v16_1_1/pc_data_loader
|
||||
src/rag/extractors/v16_1_1/pc_pattern_importer
|
||||
src/rag/extractors/v16_1_1/pc_patterns_loader
|
||||
src/rag/extractors/v16_1_1/phase1_5_mineru_block_builder
|
||||
src/rag/extractors/v16_1_1/phase1_document_parser
|
||||
src/rag/extractors/v16_1_1/phase1_document_parser_mineru
|
||||
src/rag/extractors/v16_1_1/phase2_supplementary
|
||||
src/rag/extractors/v16_1_1/phase3_entity_recognition
|
||||
src/rag/extractors/v16_1_1/phase4_5_soft_gate_v16_1_1
|
||||
src/rag/extractors/v16_1_1/phase4_5_triple_canonicalization
|
||||
src/rag/extractors/v16_1_1/phase4_6_layer_assignment_v16_1_1
|
||||
src/rag/extractors/v16_1_1/phase4_6_relation_semantic_review
|
||||
src/rag/extractors/v16_1_1/phase4_llm_relation_extraction
|
||||
src/rag/extractors/v16_1_1/phase4_llm_relation_extraction_v15_2_1
|
||||
src/rag/extractors/v16_1_1/phase4_llm_srt_extraction_v16_1_1
|
||||
src/rag/extractors/v16_1_1/phase4_relation_extraction
|
||||
src/rag/extractors/v16_1_1/phase5_post_processing
|
||||
src/rag/extractors/v16_1_1/phase5_review
|
||||
src/rag/extractors/v16_1_1/phase6_5_figure_caption
|
||||
src/rag/extractors/v16_1_1/phase6_vlm_image_extraction
|
||||
src/rag/extractors/v16_1_1/relation_block_builder
|
||||
src/rag/extractors/v16_1_1/relation_unit_builder_v16_1_1
|
||||
src/rag/extractors/v16_1_1/sectionizer_v16_1_1
|
||||
src/rag/extractors/v16_1_1/self_learning
|
||||
src/rag/extractors/v16_1_1/v15_extractor
|
||||
src/rag/extractors/v16_1_1/v15_logger
|
||||
src/rag/extractors/v16_1_1/v16_extractor
|
||||
src/rag/extractors/v16_1_2/chunk_builder
|
||||
src/rag/extractors/v16_1_2/chunk_builder_v15_2_1
|
||||
src/rag/extractors/v16_1_2/chunk_builder_v15_2_2
|
||||
src/rag/extractors/v16_1_2/chunk_builder_v15_2_3
|
||||
src/rag/extractors/v16_1_2/chunk_builder_v15_2_4
|
||||
src/rag/extractors/v16_1_2/chunk_builder_v15_2_5
|
||||
src/rag/extractors/v16_1_2/entity_linker
|
||||
src/rag/extractors/v16_1_2/entity_validator_v16_1_1
|
||||
src/rag/extractors/v16_1_2/llm_definition_generator
|
||||
src/rag/extractors/v16_1_2/methodology_reviewer
|
||||
src/rag/extractors/v16_1_2/neo4j_store_v15
|
||||
src/rag/extractors/v16_1_2/paper_metadata_enricher_v16_1_2
|
||||
src/rag/extractors/v16_1_2/pc_data_loader
|
||||
src/rag/extractors/v16_1_2/pc_pattern_importer
|
||||
src/rag/extractors/v16_1_2/pc_patterns_loader
|
||||
src/rag/extractors/v16_1_2/phase1_5_mineru_block_builder
|
||||
src/rag/extractors/v16_1_2/phase1_document_parser
|
||||
src/rag/extractors/v16_1_2/phase1_document_parser_mineru
|
||||
src/rag/extractors/v16_1_2/phase2_supplementary
|
||||
src/rag/extractors/v16_1_2/phase3_entity_recognition
|
||||
src/rag/extractors/v16_1_2/phase4_5_soft_gate_v16_1_1
|
||||
src/rag/extractors/v16_1_2/phase4_5_triple_canonicalization
|
||||
src/rag/extractors/v16_1_2/phase4_6_layer_assignment_v16_1_1
|
||||
src/rag/extractors/v16_1_2/phase4_6_relation_semantic_review
|
||||
src/rag/extractors/v16_1_2/phase4_llm_relation_extraction
|
||||
src/rag/extractors/v16_1_2/phase4_llm_relation_extraction_v15_2_1
|
||||
src/rag/extractors/v16_1_2/phase4_llm_srt_extraction_v16_1_1
|
||||
src/rag/extractors/v16_1_2/phase4_llm_srt_extraction_v16_1_2
|
||||
src/rag/extractors/v16_1_2/phase4_relation_extraction
|
||||
src/rag/extractors/v16_1_2/phase5_post_processing
|
||||
src/rag/extractors/v16_1_2/phase5_review
|
||||
src/rag/extractors/v16_1_2/phase6_5_figure_caption
|
||||
src/rag/extractors/v16_1_2/phase6_vlm_image_extraction
|
||||
src/rag/extractors/v16_1_2/relation_block_builder
|
||||
src/rag/extractors/v16_1_2/relation_unit_builder_v16_1_1
|
||||
src/rag/extractors/v16_1_2/relation_unit_builder_v16_1_2
|
||||
src/rag/extractors/v16_1_2/sectionizer_v16_1_1
|
||||
src/rag/extractors/v16_1_2/sectionizer_v16_1_2
|
||||
src/rag/extractors/v16_1_2/self_learning
|
||||
src/rag/extractors/v16_1_2/v15_extractor
|
||||
src/rag/extractors/v16_1_2/v15_logger
|
||||
src/rag/extractors/v16_1_2/v16_extractor
|
||||
src/rag/family_facts
|
||||
src/rag/hybrid_retriever
|
||||
src/rag/hybrid_retriever_fixed
|
||||
src/rag/kg_builder
|
||||
src/rag/kg_rag_fusion
|
||||
src/rag/literature_monitor
|
||||
src/rag/metadata_extractor
|
||||
src/rag/multi_hop_rag
|
||||
src/rag/multimodal
|
||||
src/rag/pc_compatibility_mapper
|
||||
src/rag/pdf_extractor
|
||||
src/rag/project_config
|
||||
src/rag/qa_v1_0_0/answer_composer
|
||||
src/rag/qa_v1_0_0/api
|
||||
src/rag/qa_v1_0_0/audit
|
||||
src/rag/qa_v1_0_0/claim_verifier
|
||||
src/rag/qa_v1_0_0/config
|
||||
src/rag/qa_v1_0_0/domain_config
|
||||
src/rag/qa_v1_0_0/entity_validation
|
||||
src/rag/qa_v1_0_0/evidence_assessor
|
||||
src/rag/qa_v1_0_0/evidence_filter
|
||||
src/rag/qa_v1_0_0/evidence_pack
|
||||
src/rag/qa_v1_0_0/fusion
|
||||
src/rag/qa_v1_0_0/hypothesis_extractor
|
||||
src/rag/qa_v1_0_0/llm_client
|
||||
src/rag/qa_v1_0_0/pc_retriever
|
||||
src/rag/qa_v1_0_0/pipeline
|
||||
src/rag/qa_v1_0_0/provisional_answer
|
||||
src/rag/qa_v1_0_0/query_builder
|
||||
src/rag/qa_v1_0_0/reranker
|
||||
src/rag/qa_v1_0_0/retrieval
|
||||
src/rag/qa_v1_0_0/schemas
|
||||
src/rag/qa_v1_0_0/v16_retriever
|
||||
src/rag/query_rewriter
|
||||
src/rag/reranker
|
||||
src/rag/retriever
|
||||
src/rag/temporal/kg_builder_with_time
|
||||
src/rag/temporal/neo4j_store
|
||||
src/rag/temporal/paper_time_extractor
|
||||
src/rag/temporal/pubmed_time_extractor
|
||||
src/rag/temporal/temporal_entity
|
||||
src/rag/temporal/temporal_graph
|
||||
src/rag/temporal/temporal_query
|
||||
src/rag/temporal/temporal_relation
|
||||
src/rag/temporal/time_extractor
|
||||
src/rag/unified/bbav5_capability
|
||||
src/rag/unified/bbav5_job
|
||||
src/rag/unified/bbav5_methodology_config
|
||||
src/rag/unified/case_package
|
||||
src/rag/unified/case_qa
|
||||
src/rag/unified_converter
|
||||
src/rag/unified/evidence_sentence_boundary
|
||||
src/rag/unified/figure_table_planner
|
||||
src/rag/unified/llm_methodology_extractor
|
||||
src/rag/unified/llm_provider
|
||||
src/rag/unified/methodology
|
||||
src/rag/unified/methodology_extractor
|
||||
src/rag/unified/methodology_payload_validator
|
||||
src/rag/unified/methodology_qa_sandbox
|
||||
src/rag/unified/methodology_reviewer
|
||||
src/rag/unified/parsed_document
|
||||
src/rag/unified/pipeline
|
||||
src/rag/unified/rnaseq_source
|
||||
src/rag/unified/schema
|
||||
src/rag/unified/simulated_data
|
||||
src/rag/unified/stage_aware_methodology
|
||||
src/rag/utils/accession_regex
|
||||
src/rag/v15_agentic_planner
|
||||
src/rag/v15_agentic_qa_routes
|
||||
src/rag/v15_hybrid_retriever
|
||||
src/rag/vector_store
|
||||
src/rag/vector_store_qdrant
|
||||
src/rag/web_search
|
||||
src/schemas/manifest
|
||||
src/utils/accession_regex
|
||||
tools/audit_functional_surface_parity
|
||||
tools/audit_migration_requirements
|
||||
tools/audit_open_source_readiness
|
||||
tools/runtime_surface
|
||||
tools/validate_v16_baseline
|
||||
@@ -4,7 +4,8 @@
|
||||
src/rag/cache/redis_cache.py
|
||||
# 源码 bug:裸变量 prefix(应为 self.prefix),rag-develop 线已修、主项目线未修。
|
||||
# 该模块 Redis 缓存为死路径(生产未启用 Redis),运行时同样 NameError。
|
||||
src/rag/extractors/v15/v15_extractor.py
|
||||
# cython 3.2.4 无法编译(pmid/pdf_path 作用域);主项目线从未在生产编译。
|
||||
src/rag/extractors/v15_3_1/v15_extractor.py
|
||||
# 同上(v15_3_1 变体)。
|
||||
|
||||
# 2026-08-31 瘦身:v15/v15_3_1 两个 bug 模块随 v13-v15 系列整体排除编译
|
||||
# (见 compile.exclude-v13-v15;源码保留在仓库,不入编译树)
|
||||
|
||||
@@ -33,7 +33,7 @@ esac
|
||||
exit 2
|
||||
}
|
||||
|
||||
echo "[legacy 1/6] Copying per compile.manifest ($(wc -l < "$MANIFEST") modules)"
|
||||
echo "[legacy 1/6] Copying per compile.manifest ($(wc -l < "$MANIFEST") modules; $(wc -l < "$SOURCE_ROOT/compile.exclude-v13-v15" 2>/dev/null || echo 0) excluded v13-v15)"
|
||||
while IFS= read -r rel; do
|
||||
src_file="$SOURCE_ROOT/$rel.py"
|
||||
[[ -f "$src_file" ]] || { echo "MISSING: $rel.py" >&2; exit 3; }
|
||||
@@ -59,9 +59,7 @@ rsync -a "$SOURCE_ROOT/scripts/utils/" "$OUTPUT_DIR/scripts/utils/" 2>/dev/null
|
||||
for d in api scripts src src/db src/llm src/llm/providers src/rag src/rag/advanced \
|
||||
src/rag/advanced/raptor src/rag/cache src/rag/db src/rag/dual_kb_taxonomy_rag \
|
||||
src/rag/entity_normalization src/rag/extractors src/rag/extractors/methodology \
|
||||
src/rag/extractors/v13 src/rag/extractors/v14 src/rag/extractors/v15 \
|
||||
src/rag/extractors/v15_3_1 src/rag/extractors/v15_3_2 src/rag/extractors/v15_3_3 \
|
||||
src/rag/extractors/v15_3_4 src/rag/extractors/v16_1_1 src/rag/extractors/v16_1_2 \
|
||||
src/rag/extractors/v16_1_1 src/rag/extractors/v16_1_2 \
|
||||
src/rag/prompts src/rag/qa_v1_0_0 src/rag/temporal src/rag/unified src/rag/utils \
|
||||
src/schemas src/utils tools; do
|
||||
mkdir -p "$OUTPUT_DIR/$d"
|
||||
|
||||
Reference in New Issue
Block a user