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fix(bioflow): 卡片防误操作+暂停立即生效+确认幂等

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- 可调整参数卡「继续」成功后按钮隐藏,显示「参数已确认」
- 确认分析路径卡「确认创建任务」成功后按钮隐藏,显示「任务已创建」
- 后端 confirm_stage 幂等:已确认且 running/queued 的重复确认放行(不再 409)
- 暂停立即生效:docker run 加 --name,docker kill 终止执行容器,
  running 阶段置 paused、任务即时暂停(kill 的 exit 137 不误判 failed)
- 340 后端用例 + 121 r3debug + 373 主套件全绿;已部署 176

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
This commit is contained in:
admin
2026-09-16 18:01:24 +08:00
co-authored by Claude Fable 5
parent becf76ecd9
commit 750e218541
6 changed files with 86 additions and 13 deletions
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bioflow_service/app/services/bioflow/kernel.py
+7 -1
View File
@@ -122,6 +122,7 @@ class Kernel:
memory: str | None = None,
module: str | None = None,
extra_mounts: list[str] | None = None,
container_name: str | None = None,
) -> list[str]:
"""拼装 docker run 命令（list，无 shell；TC-BIO-KERN-001 基元）。
@@ -140,6 +141,8 @@ class Kernel:
raise UnknownStageError(f"阶段 {stage} 无执行模块")
cmd: list[str] = ["docker", "run", "--rm", "--user", str(self.cfg.host_uid)]
if container_name:
cmd += ["--name", container_name]
cmd += ["-v", f"{job_input_dir}:{self.cfg.container_input_dir}"]
cmd += ["-v", f"{job_workspace_dir}:{self.cfg.container_workspace_dir}"]
if self.cfg.data_root:
@@ -273,10 +276,12 @@ class Kernel:
cpu: str | None = None,
memory: str | None = None,
extra_mounts: list[str] | None = None,
container_name: str | None = None,
) -> dict[str, Any]:
"""执行一个阶段 docker：返回 {exit_code, timed_out, log_tail, cmd}。
- extra_mounts：本次执行额外只读挂载的宿主绝对路径（登记路径,src==dst）
- container_name：docker run --name(暂停时按名 kill 容器用)
- 超时：terminate → 3s → kill（TC-BIO-KERN-009）
- 日志全量写 log_path（任务 logs/），返回尾部 log_tail_lines 行
- 退出码非 0 / 超时 → 失败语义由 runner 判定（本函数只报事实）
@@ -286,7 +291,8 @@ class Kernel:
memory = memory or str(params.get("memory") or "")
cmd = self.build_command(stage, job_input_dir, job_workspace_dir, params,
cpu=cpu or None, memory=memory or None,
extra_mounts=extra_mounts)
extra_mounts=extra_mounts,
container_name=container_name)
log_path = Path(log_path) if log_path else Path(job_workspace_dir) / "logs" / f"{stage}.log"
log_path.parent.mkdir(parents=True, exist_ok=True)
bioflow_service/app/services/bioflow/runner.py
+31 -3
View File
@@ -148,6 +148,7 @@ class JobRecord:
archive_id: str | None = None
pause_requested: bool = False
registered_server_paths: list[str] = field(default_factory=list) # 登记路径（自动挂载）
_running_container: str | None = None # 当前执行容器名(暂停时按名 kill)
_stage_states: dict[str, dict[str, Any]] = field(default_factory=dict)
@property
@@ -384,18 +385,30 @@ class Runner:
self.events.publish("stage_started", {
"job_id": record.id, "stage": stage, "attempt": attempt,
})
attempt_no = int(record._stage_states.get(stage, {}).get("attempt") or 0) + 1
record._running_container = f"plantai-bio-{record.id}-{stage}-{attempt_no}"
result = await self.executor(stage, record.input_dir, record.workspace_dir,
params, log_path=record.logs_dir / f"{stage}.log",
extra_mounts=self._registered_mounts(record))
extra_mounts=self._registered_mounts(record),
container_name=record._running_container)
record._running_container = None
log_tail = str(result.get("log_tail") or "")
self._set_stage(record, stage, log_tail=log_tail)
await self._persist_stage(record, stage)
self.events.publish("stage_log", {
"job_id": record.id, "stage": stage, "log": log_tail,
})
if record.pause_requested:
# 暂停请求在阶段执行期间到达(容器已被 pause_job kill)：
# 不按 exit 137 判 failed,走暂停分支
self._set_stage(record, stage, status=STAGE_PAUSED, error="")
await self._persist_stage(record, stage)
await self._pause_job(record, stage)
return "paused"
outcome = await self._judge_stage(record, stage, result)
return outcome
finally:
record._running_container = None
self.semaphore.release()
async def _acquire(self, record: JobRecord, stage: str) -> bool:
@@ -497,6 +510,10 @@ class Runner:
async def confirm_stage(self, record: JobRecord, stage: str, params: dict[str, Any]) -> None:
"""阶段确认（FR-BIO-009）：校验参数→存表→执行（并发排队）。"""
status = self.stage_status(record, stage)
# 幂等：已确认且正在执行/排队（如前端重复点击「继续」），直接放行不报 409
st_existing = record._stage_states.get(stage, {})
if status in (STAGE_RUNNING, STAGE_QUEUED) and st_existing.get("_confirmed"):
return
if status not in (STAGE_WAITING_CONFIRM, STAGE_QUEUED, STAGE_WAITING):
raise RunnerError("STAGE_NOT_CONFIRMABLE", f"阶段 {stage} 当前状态 {status} 不可确认")
allowed = self._allowed_param_names(stage)
@@ -611,14 +628,25 @@ class Runner:
logger.exception("runner: skip 后推进异常 %s", record.id)
async def pause_job(self, record: JobRecord) -> None:
"""暂停（FR-BIO-010）：等待当前阶段完成后停在阶段边界。"""
"""暂停（FR-BIO-010）：running 阶段有执行容器时立即 kill,任务即刻暂停。"""
if record.status not in (JOB_RUNNING, JOB_AWAIT_INPUTS):
raise RunnerError("JOB_NOT_RUNNING", f"任务 {record.id} 当前状态 {record.status} 不可暂停")
record.pause_requested = True
await self._persist_job(record)
# 无 running 阶段 → 立即暂停
# 有 running 阶段 → kill 执行容器(立即生效;失败仅日志,不阻断暂停语义)
running = [s for s in record.stage_chain
if self.stage_status(record, s) == STAGE_RUNNING]
if running and getattr(record, "_running_container", None):
name = record._running_container
try:
proc = await asyncio.create_subprocess_shell(
f"docker kill {name}",
stdout=asyncio.subprocess.PIPE,
stderr=asyncio.subprocess.STDOUT,
)
await asyncio.wait_for(proc.communicate(), timeout=30.0)
except Exception as exc: # noqa: BLE001 - kill 失败不阻断(仍走阶段边界暂停)
logger.warning("pause_job: docker kill %s 失败: %s", name, exc)
if not running:
await self._pause_job(record, None)
bioflow_service/tests/test_runner.py
+24 -2
View File
@@ -19,6 +19,9 @@ from app.services.bioflow.runner import (
JOB_FAILED,
JOB_PAUSED,
STAGE_DONE,
STAGE_PAUSED,
STAGE_QUEUED,
STAGE_RUNNING,
STAGE_FAILED,
STAGE_SKIPPED,
STAGE_WAITING_CONFIRM,
@@ -177,7 +180,7 @@ def test_rerun_non_failed_rejected(db, events, catalog, fake_executor):
def test_pause_at_stage_boundary(db, events, catalog):
"""TC-BIO-RUN-006：暂停在阶段边界（当前阶段完成后停）。"""
"""TC-BIO-RUN-006：运行中暂停立即生效（当前阶段置 paused,不判失败）。"""
executor = FakeExecutor(delay=0.05)
async def scenario():
@@ -192,10 +195,29 @@ def test_pause_at_stage_boundary(db, events, catalog):
runner, record = _scenario(scenario)
assert record.status == JOB_PAUSED
assert runner.stage_status(record, "identify") == STAGE_DONE
assert runner.stage_status(record, "identify") == STAGE_PAUSED # 立即暂停语义
assert all(c["stage"] != "phylogeny" for c in executor.calls)
def test_confirm_idempotent_while_running(db, events, catalog):
"""确认幂等：已确认且 running/queued 的重复 confirm 不报 409。"""
executor = FakeExecutor(delay=0.1)
async def scenario():
runner = make_runner(db, events, executor, catalog)
record = await runner.create_job(
"s1", "t", ["identify"], auto_continue=False, auto_start=False)
await runner.run_job(record) # 手动模式:停 waiting_confirm
await runner.confirm_stage(record, "identify", {})
# 立即二次 confirm:阶段已 running 且 _confirmed → 幂等放行,不抛异常
await runner.confirm_stage(record, "identify", {})
await _drain(runner)
return runner, record
runner, record = _scenario(scenario)
assert runner.stage_status(record, "identify") in (STAGE_RUNNING, STAGE_DONE, STAGE_QUEUED)
def test_resume_continues_without_rerun(db, events, catalog):
"""TC-BIO-RUN-007：暂停后恢复续跑，不重跑已完成。"""
executor = FakeExecutor(delay=0.02)
ui/src/components/chat/FlowFormCard.vue
+7
View File
@@ -247,11 +247,13 @@ const continueText = computed(() => {
>{{ autoContinue ? 'ON' : 'OFF' }}</button>
</label>
<button
v-if="!props.block.submitted"
class="ffc-continue"
type="button"
:disabled="submitting"
@click="submit"
>{{ continueText }}</button>
<span v-else class="ffc-confirmed">{{ BF.formConfirmed }}</span>
</div>
<div v-if="submitError" class="ffc-submit-err">{{ submitError }}</div>
</div>
@@ -396,6 +398,11 @@ const continueText = computed(() => {
box-shadow: none;
transform: none;
}
.ffc-confirmed {
font-size: 12.5px;
font-weight: 600;
color: var(--pa-ink-subtle);
}
.ffc-submit-err {
margin-top: 8px;
font-size: 12px;
ui/src/components/chat/FlowPathCard.vue
+15 -7
View File
@@ -165,13 +165,16 @@ defineExpose({ select: pick, confirm: confirmCreate });
</div>
</div>
<div class="fpc-actions">
<button class="pane-btn" type="button" :disabled="confirming" @click="backToSelect">{{ BF.jobsConfirmNo }}</button>
<button
class="fpc-confirm"
type="button"
:disabled="!canConfirm"
@click="confirmCreate"
>{{ confirmLabel }}</button>
<template v-if="!props.block.jobId">
<button class="pane-btn" type="button" :disabled="confirming" @click="backToSelect">{{ BF.jobsConfirmNo }}</button>
<button
class="fpc-confirm"
type="button"
:disabled="!canConfirm"
@click="confirmCreate"
>{{ confirmLabel }}</button>
</template>
<span v-else class="fpc-created">{{ BF.pathCreated }}</span>
</div>
<div v-if="error" class="fpc-error">{{ error }}</div>
</template>
@@ -285,6 +288,11 @@ defineExpose({ select: pick, confirm: confirmCreate });
gap: 8px;
margin-top: 10px;
}
.fpc-created {
font-size: 12.5px;
font-weight: 600;
color: var(--pa-ink-subtle);
}
/* 确认按钮：--pa-gradient 底白字 12.5px/600，r-md padding 7px 14px；禁用 opacity .45 */
.fpc-confirm {
padding: 7px 14px;
ui/src/i18n/bioflow.js
+2
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@@ -18,6 +18,8 @@ export const BF = {
pathConfirm: '确认此路径',
pathEmpty: '暂无候选路径',
pathPlanning: '正在分析需求并规划分析路径…',
formConfirmed: '参数已确认',
pathCreated: '任务已创建',
pathConfirming: '确认中…',
pathFallback: '规划降级：',
pathReuseNote: '复用存档',